F23037

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23037

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23037

Determination of introduced cDNA(s)

  • RAFL11-06-E02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-06-E02 - Resource: pda02135

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-06-E02 - full reading 
    ACAAATCTCT GAAGTAAAAT GACGTTCCCT TCTCTTTCTG TCTCATTTCT 
    CTTCTTTGCC TTCATATTCG TTACGCATGC ATTCGACCTC AGCATCATCC 
    AGATGCAACA GGGAACATGT CCGTACACGG TGGTTGTCAT GACAAGCTGT 
    CTTTCTCCGG AGTCGACAAG AGATCAGATC AGCATTGTTT TTGGCGATGC 
    CGACGGTAAC AAGGTGTATG CACCGAAACT AGGGGGTTTG GTAAGAGGAC 
    CAGGGGGTTT GGGGAAGTGT TCAACGAACA CATTCCAAGT CAGAGGTCAA 
    TGTTTGAATG ACCCTATCTG CTCTCTCTAT ATCAACCGGA ATGGACCCGA 
    CGGTTGGGTC CCGGAGTCCA TTGAGATCTA CTCAGAAGGT TCAAAGTCCG 
    TTAAATTCGA TTTCAGCAAG AGCGTCCCTC AACTAAACAC TTGGTACGGC 
    CACAACAACT GCAACACCAC AGGCAGACCA TCGTCTCCCG ATCTGCCTCC 
    ACCACATTTT CCGCCAGAGT TTCCACCGGA GACACCTACC ACCCCACCGC 
    CGCCTCCACC AAGGCCGTCT GCTGCTTCAA GGCTTGGAAA TGGTGAGAGT 
    GTTTTCCTTG CGTTTGCCAT TGCGACTTCG ATTGCCGCAA TGGTGCGTTG 
    GAGTTACTAG CATGGTACTT GAAGAGCATG TTGTTGGGTT GTATGAGGCT 
    TTTTCTTTCC GTCGAATGTT TTTATTTGCT TTCGTTTTGC TTCAGCCTTT 
    TCCTTGTTGT AGAAAACATA ATTACTTATT AAGTATGTGC GCATGAGTTC 
    CTGTTTAGCT ATGATTATTA ATCAGTTGGT ACCG

    Gene models with high sequence identity

    1. AT5G07190.1 [+] show detail - seed gene 3
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Embryo-specific 3 1.6e-46
    superfamily Lipase/lipooxygenase, PLAT/LH2 5.2e-19

    See the detailed result >

    AT5G07190.1

    Model type
    Protein coding
    Short Description
    seed gene 3
    Curator Summary
    Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.
    Computational Description
    seed gene 3 (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: anchored to membrane, membrane; EXPRESSED IN: embryo, leaf whorl, carpel, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3, (ATS3) (TAIR:AT5G62210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR