F23120

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23120

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23120

Determination of introduced cDNA(s)

  • RAFL05-14-O08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-O08 - Resource: pda02616

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-O08 - full reading 
    GAGAGACGAT AATGGGAGGA GCTTTATCAA CTGTGTTTGG AAGTGGAGAA 
    GATGCAACAG CTGCAGGGAC CGAATCTGAG CCAAGTCGCG TCCTAAAGTT 
    TAGCTCTTCC GCTCGGTGGC AACTTCATTT CAACGAGATC AAAGAATCAA 
    ACAAACTGCT GGTGGTTGAT TTCTCGGCCT CATGGTGCGG ACCATGTAGG 
    ATGATTGAGC CTGCGATTCA TGCCATGGCT GATAAGTTCA ATGATGTTGA 
    TTTCGTCAAA TTAGATGTTG ATGAACTTCC TGATGTGGCT AAAGAGTTTA 
    ATGTGACGGC AATGCCTACC TTTGTGCTGG TGAAAAGGGG TAAAGAAATT 
    GAAAGAATCA TTGGTGCCAA AAAGGACGAA CTTGAGAAGA AAGTTAGCAA 
    ACTCAGAGCA TAATGAGCAT TGTTAACGCC TTAACCAATA GTCTTGTGTA 
    AACTCAATAA TAAATGGTAT GTTTATGGGG AATGTGATGT TCTATACTCT 
    CTGCTAATGT AAGACCTTCT GTGTGATGCC ATGATTGATT GAAATGGTTT 
    GTTC

    Gene models with high sequence identity

    1. AT5G39950.1 [+] show detail - thioredoxin 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Thioredoxin, conserved site 0
    FPrintScan Thioredoxin-like subdomain 2.2e-06
    FPrintScan Thioredoxin-like subdomain 2.2e-06
    FPrintScan Thioredoxin-like subdomain 2.2e-06
    HMMPfam Thioredoxin domain 3.2e-29
    superfamily Thioredoxin-like fold 2.4e-32
    Gene3D Thioredoxin fold 2.7e-32
    ProfileScan Thioredoxin-like 14.487
    HMMPanther THIOREDOXIN H-TYPE-RELATED 3.9e-54
    HMMPanther Thioredoxin, core 3.9e-54

    See the detailed result >

    AT5G39950.1

    Model type
    Protein coding
    Short Description
    thioredoxin 2
    Curator Summary
    encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
    Computational Description
    thioredoxin 2 (TRX2); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: N-terminal protein myristoylation, sulfate assimilation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 7 (TAIR:AT1G59730.1); Has 19714 Blast hits to 19583 proteins in 2950 species: Archae - 262; Bacteria - 11021; Metazoa - 1828; Fungi - 880; Plants - 1790; Viruses - 14; Other Eukaryotes - 3919 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR