F23422

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F23422

Determination of introduced cDNA(s)

  • RAFL04-17-F09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-F09 - Resource: pda13445

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-F09 - full reading 
    AATATCAATA GCCGTACACG CGTGAAGACT GACAATATTA TCTTTTTCGA 
    ATTCGGAGCT CAAGTTTGAA ATTCGGAGAA GCTAGAGAGT TTTCTGAGAT 
    GGCTCGTACT AAGCAAACAG CTCGTAAGTC TACTGGAGGA AAGGCTCCTA 
    GGAAGCAGCT TGCTACAAAG GCTGCACGTA AGTCTGCACC AACCACTGGA 
    GGAGTCAAGA AGCCCCATCG TTACCGTCCA GGAACTGTTG CACTACGTGA 
    AATTCGTAAG TACCAGAAGA GTACCGAGTT GCTGATCAGG AAGCTCCCTT 
    TCCAGAGGCT AGTTCGTGAG ATTGCCCAGG ATTTCAAGAC TGACTTGCGT 
    TTCCAGAGCC ATGCTGTGCT TGCACTCCAG GAGGCTGCTG AAGCATACCT 
    TGTGGGTCTC TTTGAGGACA CTAACCTTTG CGCCATCCAT GCCAAGCGTG 
    TGACCATAAT GCCCAAAGAC ATTCAGCTCG CTCGCAGGAT CAGAGGAGAA 
    CGTGCTTAAT TGTGATTGGG AAGTAGTTGG ATTATGTGAA TGTGGGTGGT 
    TTTCTAAATA GATAGTTGGA ATTAGATAAT GGCTTAAAAA GCTTTTGGGT 
    GTAGGAGACT TGGAAACAAT GGTGTTTTTT TTTTCTTTTC TTTCTGTTTC 
    TTGTCTAGTC GGTTTATGAT TTGCTTGTGT TCTTCTTAGC TACGTTTTGT 
    GGTGTGTATT GCTTTCTTCT TTGGCAATGT TGAACACCTT TTGTTGTTGA 
    ATTCATCTCT GAAACATATG AATATGTTAA AGTTTCTGAC TT

    Gene models with high sequence identity

    1. AT4G40040.1 [+] show detail - Histone superfamily protein
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Histone-fold 2.5e-55
    Gene3D Histone-fold 1e-67
    HMMPanther Histone H3 2.5e-121
    PatternScan Histone H3 0
    PatternScan Histone H3 0
    HMMSmart Histone H3 1.1e-74
    HMMPfam Histone core 6.5e-33
    FPrintScan Histone H3 7.2e-85
    FPrintScan Histone H3 7.2e-85
    FPrintScan Histone H3 7.2e-85
    FPrintScan Histone H3 7.2e-85
    FPrintScan Histone H3 7.2e-85
    FPrintScan Histone H3 7.2e-85
    FPrintScan Histone H3 7.2e-85

    See the detailed result >

    AT4G40040.1

    Model type
    Protein coding
    Short Description
    Histone superfamily protein
    Computational Description
    Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR