F23529

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23529

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23529

Determination of introduced cDNA(s)

  • RAFL09-48-M12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-M12 - Resource: pda06405

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-M12 - full reading 
    ACGGAGTCGC TTTTGAGATA TCGATCTTAC GAAGAAGCAA ATATGGCGGT 
    CCCATTGCTT ACCAAGAAGG TTGTGAAGAA GAGGTCTGCT AAGTTCATCA 
    GACCCCAGAG TGACCGTAGA ATCACCGTCA AGGAAAGCTG GAGGAGGCCA 
    AAGGGTATTG ATTCAAGGGT GAGAAGAAAG TTCAAAGGTG TGACTTTGAT 
    GCCCAATGTT GGTTACGGAT CTGACAAGAA GACTCGTCAC TATCTTCCCA 
    ATGGATTCAA GAAATTCGTT GTTCACAACA CAAGTGAGCT CGAGTTGTTG 
    ATGATGCACA ACAGGACTTA CTGTGCTGAG ATTGCTCACA ACGTCTCCAC 
    TAAGAAGAGA AAGGCAATTG TTGAGAGAGC TTCTCAGCTA GACGTTGTTG 
    TTACCAACAG GCTTGCTAGG CTCCGTAGCC AAGAAGACGA GTGAAGAAGA 
    ATCTTGCCTA CTACTTAGTT GTTTCTTCTG TTTTGTTGCA TTTCCTTTTT 
    GTTATAAGAC GATTTTTGAT TACTGCTGTG TTTGTGTTTG GAGTGAACAA 
    ACATGAGTTT TGGTTTTAGT ATGAAACAGA TCAAGTTAAG ACCTTTTGTT 
    AAAGCTATTT CGGATTCATT ACTTGTCAAA GGTTGAGCCT AAAAAAAT

    Gene models with high sequence identity

    1. AT4G18100.1 [+] show detail - Ribosomal protein L32e
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L32e 4.8e-47
    PatternScan Ribosomal protein L32e, conserved site 0
    HMMPanther Ribosomal protein L32e 7.3e-70
    HMMPanther 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RN 7.3e-70
    BlastProDom Ribosomal protein L32e 2e-65
    superfamily Ribosomal protein L32e 8.9e-53

    See the detailed result >

    AT4G18100.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L32e
    Computational Description
    Ribosomal protein L32e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: callus, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: Ribosomal protein L32e (TAIR:AT5G46430.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR