F23533

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23533

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23533

Determination of introduced cDNA(s)

RAFL09-07-I01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-I01 - Resource: pda05179

full reading [+] show sequence

GTGCCATTAG CTTTTACATT AAGAGAAAAC ACTTGCAAAA CTAAGTGCTA 
TCTCTCTTCT TCTTCCTTCT CCTAACAACT TATATACCAT GAGTCTCTTC 
AACACTGAAA ACACATGGGC CTTTGTCTTT GGCTTGCTCG GCAACCTTAT 
CTCCTTTGCC GTGTTCCTAT CTCCTGTGCC AACGTTCTAT AGGATTTGGA 
AGAAGAAGAC AACAGAAGGG TTTCAGTCTA TTCCTTATGT TGTGGCGCTC 
TTCAGTGCGA CGCTTTGGCT TTACTATGCG ACACAGAAGA AAGATGTCTT 
CCTCCTCGTA ACCATTAACG CCTTTGGTTG CTTCATCGAA ACCATCTACA 
TCTCTATGTT CCTTGCCTAC GCTCCCAAGC CAGCTCGGAT GTTGACAGTG 
AAGATGCTAC TTCTTATGAA CTTTGGAGGA TTCTGTGCGA TTCTCCTTCT 
TTGCCAATTC TTGGTAAAAG GAGCCACACG TGCTAAGATT ATCGGAGGAA 
TCTGTGTCGG ATTCTCTGTT TGTGTTTTCG CTGCTCCTCT AAGCATAATC 
AGGACGGTAA TAAAGACAAG AAGTGTGGAG TACATGCCCT TTAGCTTATC 
CTTAACCCTT ACCATCAGTG CTGTCATATG GCTCCTTTAT GGTCTTGCTC 
TCAAGGACAT CTATGTTGCT TTCCCGAATG TGCTTGGTTT TGCTCTCGGT 
GCACTCCAAA TGATACTCTA CGTTGTCTAC AAATACTGTA AAACGTCGCC 
GCATCTAGGA GAGAAAGAAG TCGAAGCTGC TAAGTTACCG GAGGTGAGCC 
TCGATATGTT GAAGCTAGGC ACAGTTTCAT CCCCTGAGCC AATCTCAGTG 
GTTCGTCAAG CGAACAAGTG TACCTGCGGA AATGATCGAA GGGCTGAGAT 
TGAAGATGGA CAAACCCCTA AACATGGCAA GCAGTCCTCT TCCGCAGCAG 
CTACATGAAT AAAAATACGT TAATGTTGAC TTTACCCCAA CTTGATATAC 
CAACCACCAC GTGTACCCCG TTACGCTGTC GTATTTTTCT GAGTTTATCA 
AGTGTGCGAA GTAGAGGATT AATTTTCCGG AGTTAGTTTC TCTACTTCTT 
TATAAAAATT TGTGTAATTA TCTATTGGGG ATAATGTATA TTTCCTATTT 
TCTGATTTAA CGAAAACTAT CT

Gene models with high sequence identity

AT3G48740.1 [+] show detail - Nodulin MtN3 family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	MtN3/saliva-related transmembrane protein, conserved region	1.7e-29
HMMPfam	MtN3/saliva-related transmembrane protein, conserved region	2.1e-28
HMMPanther	RAG1-activating protein 1 homologue	4.3e-93
HMMPanther	RAG1-activating protein-1-related	4.3e-93

See the detailed result >

AT3G48740.1

Model type: Protein coding
Short Description: Nodulin MtN3 family protein
Computational Description: Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: homolog of Medicago truncatula MTN3 (TAIR:AT5G23660.1); Has 1006 Blast hits to 953 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 236; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
Link: InterPro Scan - TAIR