F23802

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F23802

Determination of introduced cDNA(s)

  • RAFL05-12-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-E01 - Resource: pda02533

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-E01 - full reading 
    ATCCACACAT AATCACGATG AAGCTCTTTG TTCATCTCTC TATCTTCTTC 
    TCCATCCTCT TCATCACTCT CCCATCTTCT TACAGCTGCA CCGAAAATGA 
    CAAGAATGCC CTCCTTCAAA TCAAGAAAGC ACTTGGCAAT CCTCCCCTTC 
    TATCCTCCTG GAACCCCCGA ACCGACTGTT GTACCGGCTG GACCGGCGTC 
    GAATGCACTA ACCGTCGCGT TACCGGTCTC AGCGTTACCT CCGGCGAAGT 
    CTCCGGTCAG ATCTCGTACC AGATCGGCGA CCTCGTTGAC CTCCGTACAC 
    TAGATTTCAG CTACCTGCCA CACCTCACCG GAAACATCCC ACGCACCATC 
    ACCAAACTCA AGAACCTCAA CACTCTCTAC TTGAAGCACA CTAGTCTCTC 
    CGGTCCGATT CCTGATTACA TCAGCGAGCT CAAGAGCCTC ACGTTCTTGG 
    ACCTTTCTTT TAACCAATTT ACCGGTCCAA TTCCCGGTTC GCTATCTCAG 
    ATGCCGAAGC TTGAAGCCAT TCAAATCAAC GATAATAAGC TAACCGGTTC 
    TATACCAAAC TCTTTCGGTT CTTTTGTTGG CAACGTCCCT AATCTCTACT 
    TGTCTAACAA TAAGCTGTCA GGAAAAATAC CGGAATCGTT GTCTAAATAC 
    GACTTCAACG CAGTGGATTT GTCGGGAAAT GGTTTCGAAG GAGATGCCTT 
    TATGTTCTTC GGACGGAACA AAACAACAGT ACGAGTGGAT TTGTCGAGAA 
    ACATGTTTAA TTTCGATCTC GTCAAGGTTA AGTTCGCTAG AAGCATAGTT 
    TCGTTGGATC TGAGCCAGAA CCATATCTAC GGGAAGATAC CACCAGCACT 
    GACTAAACTA CACCTCGAGC ATTTCAACGT GAGCGACAAC CATCTCTGCG 
    GAAAAATCCC AAGTGGCGGT CTACTTCAGA CCTTTGAACC ATCTGCCTTC 
    GCTCACAACA TCTGTCTTTG TGGAACTCCC CTTAAGGCTT GTTAATTTGG 
    TTTAATCTTG GCGGAAGAAT AAAAATAATG TTGAATATGT TATGATGATG 
    TGTTCATTAT CACCGCCAAA CCAAGTTTAT TGTTTCTTTG TTATGAATTT 
    AATTTAATGG CAAGAATTGG TTACGT

    Gene models with high sequence identity

    1. AT3G12145.1 [+] show detail - Leucine-rich repeat (LRR) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Leucine-rich repeat 0.043
    HMMPfam Leucine-rich repeat 0.37
    HMMPfam Leucine-rich repeat 0.16
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 6.6e-14
    HMMPanther LRR RECEPTOR-LIKE KINASE 8.4e-55
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8.4e-55
    superfamily L domain-like 1.1e-61
    Coil coiled-coil 0
    Gene3D no description 6e-72

    See the detailed result >

    AT3G12145.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat (LRR) family protein
    Curator Summary
    A novel leucine-rich repeat protein. Interacts directly with MADS domain transcription factor.
    Computational Description
    FLOR1 (FLR1); FUNCTIONS IN: enzyme inhibitor activity, transcription factor binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 1 (TAIR:AT5G06860.1); Has 42601 Blast hits to 16185 proteins in 663 species: Archae - 31; Bacteria - 1045; Metazoa - 3045; Fungi - 233; Plants - 35461; Viruses - 0; Other Eukaryotes - 2786 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR