F23840

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23840

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23840

Determination of introduced cDNA(s)

  • RAFL06-08-N02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-N02 - Resource: pda02908

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-N02 - full reading 
    GATAAAGTAG AAACCCTAGT TTGAATTTTC ACGGCCGACC TCTCTCTCAT 
    CCTCCGAGTA TTGTTGGCTT CAGACCAAAT CTTCTCCGGC GCTGCGGCGT 
    TTCCCCCGCA AAAGGTAGAA GTAGCTGATT ACAGGAACAA TGATGTCCTT 
    TGAAATGAAT GACCGGAAAA AAATCGGGTT AGGCCTGACA GGATTTGGCG 
    TATTCTTCTC GTTTTTGGGA ATAGTCTTCG TCTTTGATAA GGGATTACTT 
    GCCATGGGAA ATATTCTTTT CATCTCGGGG GTTAGTCTAA CCATTGGCTT 
    CAAGTCTACC ATGCAGTTCT TCATGAAGCG TCAAAATTAT AAGGGAACCA 
    TCTCTTTTGG CGTCGGTTTC TTCTTTGTTA TCATCGGGTG GCCTATCTTG 
    GGAATGATGT TGGAGACCTA TGGCTTTTTC GTACTCTTCA GTGGCTTCTG 
    GCCTACCTTG GCAGTCTTTG CTCAGAAGAT ACCCGTTCTG GGTTGGATTA 
    TTCAGCAACC ATATATTAGA TCGTTCTTTG ACAAGTACCG GGGCAAGCGA 
    GTGCCGGTCT AGTCTTCCAT CCCGAGCAGA GAGACGATTC ACTGAGCTAG 
    ATGCAGCTGA ACAGGCGATT AAAGTTTTTG GAAGAAGAAG TTTCGTGATC 
    CTGTAGAAAA CTAAAACCAT AGGAGAAAGA AAATAGGAAG GAAAAGAACG 
    TACAATTTGA AGCTGTGTGT CTATGTTTCA GGTGAAGTAG ATGAATCTTC 
    GTCCAGGTTG CAAATTGCAA CAGAATGTTA AAAATGTAAT GTTTTATTTT 
    TGGGTTAGTT ATAGGTTACA CCTCAATTTT GGAAACTAAT TAAAGAGAAA 
    CAATTGTTTC TATTCACAAA AACTTTTTGT AACCATTACG CATTACATAA 
    TTTTAATCAT ATTGTTATTA ACT

    Gene models with high sequence identity

    1. AT3G49420.1 [+] show detail - Got1/Sft2-like vescicle transport protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Vesicle transport protein, Got1/SFT2-like 4.1e-18
    HMMPanther CGI-141-RELATED/LIPASE CONTAINING PROTEIN 4.2e-34

    See the detailed result >

    AT3G49420.1

    Model type
    Protein coding
    Short Description
    Got1/Sft2-like vescicle transport protein family
    Computational Description
    Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2); Has 450 Blast hits to 450 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 112; Plants - 96; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR