F24420

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24420

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24420

Determination of introduced cDNA(s)

  • RAFL06-80-P13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-P13 - Resource: pda03793

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-80-P13 - full reading 
    ACACTCACTC AATCATACCT TTCTCTGGAG ACCTCCACAG GGTTTGTTTC 
    CGGAAATGTC GAACGGCACG GATCAGGCTC AACCACCACC GGAGAACCCG 
    GCTACTCCGG TGGATTCGAA GTCACGGAAA CGTGCGACGC CAGGGGATGA 
    TAATTGGCTT CCTCCTGATT GGAGAACCGA AATTAGGGTT CGAACCTCTG 
    GCACTAAAGC TGGTACTGTT GATAAGTTCT ACTACGAACC GATTACGGGT 
    CGTAAGTTCC GGTCCAAGAA CGAGGTTTTG TACTATTTGG AACACGGGAC 
    GCCTAAAAAG AAGTCCGTCA AGACAGCGGA AAACGGAGAC TCACATTCCG 
    AACATTCTGA AGGTAGAGGA AGCGCTAGGC GGCAGACAAA ATCCAACAAA 
    AAGGTTACTG AGCCACCGCC AAAGCCGTTG AACTTCGATT TTCTGAATGT 
    GCCGGAGAAG GTTACTTGGA CTGGGATAAA CGGTTCAGAA GAAGCTTGGT 
    TGCCTTTCAT TGGGGACTAC AAGATTCAAG AATCTGTCAG CCAAGATTGG 
    GACAGAGTAT TCACTCTTGT CACCTCCCAA AACGCTGGAA AAACGATGTT 
    CTAGAAGATT GCTGCAGAAA CTCACAAATT GTAATAACAC GCGCTGCTAG 
    ATTATCATAT CTACTTAGTA TTTACTGATC GTTGGTTGGA ATGCAGGTTA 
    ATTTTTTAGT AGTGATAGTT TTAGTAACAC TTTGATTTGA GTTGTAATGT 
    ACTTTCTTAA CATTTTCTTA GATAATTTGA AGGCAATGTA TGTCTATATT 
    ATTGCCTTTG AGAGAATCCG ATAGTAACAA AGTTATGAAA TCTAAAGTTC 
    GATGTGCGGT ACTCCAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G46580.1 [+] show detail - methyl-CPG-binding domain protein 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Methyl-CpG DNA binding 1.6e-27
    HMMPanther METHYL-CPG-BINDING PROTEIN 2 0.00028
    Gene3D Methyl-CpG DNA binding 1.1e-10
    superfamily DNA-binding, integrase-type 2.8e-13
    ProfileScan Methyl-CpG DNA binding 14.746

    See the detailed result >

    AT3G46580.1

    Model type
    Protein coding
    Short Description
    methyl-CPG-binding domain protein 5
    Curator Summary
    Protein containing a putative methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
    Computational Description
    methyl-CPG-binding domain protein 5 (MBD5); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: perinucleolar chromocenter; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 6 (TAIR:AT5G59380.1); Has 120 Blast hits to 118 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 4; Plants - 49; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR