F24945

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24945

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24945

Determination of introduced cDNA(s)

  • RAFL06-07-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-A05 - Resource: pda01388

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-A05 - full reading 
    AATTCAACTA ACAAAAAAAT GTCAGTAGCT TCACCGATTC AATGTATCAG 
    GATTCTAAAT CCATCATCTT CATCTTCTTC TTCGACAGCT TCGTCGTCTT 
    TTAGATTCTC AACAACGACT AAGCCATGTG TCTTCATCAT CAGATGCTCT 
    CAGACAGAAG GTCCTTTAAG AAGACCATCG GCTCCTCCTA CTCTCCGGGA 
    GCCTCAAAAA CCTGTTCCTC CATCACAGCC ATCTTCCTCT CCTCCTCCTT 
    CTCCGCCGCC GCAGAAAGCT GTAGCTGTTG ATGGGAAGAG TGTAACTACA 
    GTGGAGTTTC AGAGACAAAA GGCTAAAGAG CTTCAAGAGT ACTTTAAACA 
    GAAAAAGCTT GAAGCTGCTG GTCAAGGTCC CTTTTTTGGT TTCCAACCCA 
    AAAATGAGAT CTCCAATGGA AGGTGGGCTA TGTTTGGTTT CGCAGTTGGT 
    ATGCTCACAG AGTATGCAAC AGGATCAGAC CTTGTTGATC AAGTTAAGAT 
    CCTTCTCTCA AATTTCGGCA TTCTAGACTT GGAATAATAA GAGTGTTGTT 
    GTTATATATA GACAGATCCT TTTCTCTCTT CTCTTCGATT CCTCTTCTTG 
    TTGTTTCTTC TTCTTCTTCC TGTATATGTA TCTATATAAT ACAGGGCCAT 
    TTGTGTATTC AATCACTTTT ATCTTCAAAT GGTATAAATA CGATCTTGTA 
    CCAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G34000.1 [+] show detail - one-helix protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G34000.1

    Model type
    Protein coding
    Short Description
    one-helix protein 2
    Curator Summary
    Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions.
    Computational Description
    one-helix protein 2 (OHP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 171 Blast hits to 159 proteins in 56 species: Archae - 0; Bacteria - 5; Metazoa - 24; Fungi - 6; Plants - 64; Viruses - 16; Other Eukaryotes - 56 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR