F25744

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25744

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25744

Determination of introduced cDNA(s)

  • RAFL04-16-J06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-J06 - Resource: pda00554

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-J06 - full reading 
    AGAACCGACT TATTAGAGCT TCGAGTCTCC TCAAATCTTC TTCTACGATT 
    TTTTCTTCTA GGTTTAGAGC TTTTGATTCT CCGATCAATT TCGCGATTTG 
    TTGAACTAGG ATCTGAAATT AGAATGGGTG GTGAAGCAGA TTCGAGGCAG 
    CCGCTGACTG CTGAAGGCGT AGCTGTTGCC GTGAACGTCA GATGCTCCAA 
    TGGCACGAAA TTTAGTGTGA CGACGAGCCT CGATTCCACG GTGGAGTCTT 
    TCAAAGAGTT AATTGCGCAG AACAGCGATG TGCCGGCAAA TCAGCAGCGT 
    TTGATTTACA AGGGACGTAT CCTCAAAGAC GATCAGACTC TCCTCAGCTA 
    TGGTTTGCAG GCTGATCACA CCGTTCATAT GGTTCGAGGT TTTGTGCCTT 
    CTTCTCCTTC TGCTCCCGCT GCAAATGCTG GAAACCAAAC CACTGCTCCT 
    CAAGCGGTTG GTTCAAATGA TAGCTCAAAC CTCGGAGGAG GTGAATCTTT 
    GTTCCCTGGC CTTGGATTTA ATCCTTTGGG TGGTGGAAAT GCTATGGCTG 
    GATTATTTGG ATCTGGTCTT CCTGATCTTG AGCAGGCACA GCAACAACTA 
    GCTCAGAACC CTAACATGAT TAGAGAGATG ATGAATACTC CAGCCATCCA 
    GAATCTTATG AACAACCCAG AATTTATGAG GAGTATGATT ATGAATAACC 
    CTCAAATGCG TGAGCTTGTA GATCGCAATC CTGAGCTTGG TCATGTGCTC 
    AATGACCCAA GCATCCTTCG TCAAACTCTA GAAGCGGCGA GAAACCCAGA 
    GCTTATGCGT GAAATGATGA GAAATACTGA TAGGGCTATG AGTAATATTG 
    AGTCTATGCC TGAGGGATTT AACATGCTTA GGCGTATGTA TGAAAATGTC 
    CAGGAACCGT TAATGAATGC TACCACTATG TCCGAGAATG CTGGAAACAA 
    TACGAGCTCT AATCCATTTG CTGCTCTTCT GGGAAACCAG GGGGTTACTA 
    CACAAGGAAG CGATACTTCT AATAATATTT CGGCACCGAA TGCTGAAACG 
    GGTACACCTA ATGCAAATCC ACTTCCTAAT CCTTGGGGTG CCACGGCTGG 
    CCAGACAACT GCCCCTGGAA GGACAAATGC TGGACTTGGT GGTCTTGGTG 
    GGCTTGGAGG CCTTGGTGGA CTCGGTATGC TGGGAGCGGA CTCACCTCTT 
    GGTGCGACTC CAGATGCTTC TCAATTGAGC CAAATACTGC AAAACCCCGC 
    TATGTCGCAG ATGATGCAAA GCGTACTTTC CAATCCACAG TACATGAATC 
    AGCTTATGAG TCTTAACCCA CAACTCCGAA GCATGCTAGA TATGAATCCT 
    CAGTTGAGGG AAATGATGCA GAACCCTGAT TTCCTTCGCC AGTTTAGCTC 
    TCCCGAGATG ATGCAGCAAA TGATGTCTCT ACAACAATCA CTTTTCTCTC 
    AGAATAGGAA CACGGCTGGC CAGGATCCTA CGCAAACTGG TGCTGCGACA 
    GGGACAGCCA ATAACGGAGG ACTAGATTTA TTGATGAATA TGTTTGGCAG 
    CCTTGGTGCT GGCGGCCTAA GTGGCACAAA CCAACCCAAT GTTCCTCCTG 
    AAGAGCGATT TGCGACTCAG TTGCAACAGT TGCAAGAAAT GGGATTCTAC 
    GACAGAGCAG AGAACATAAG GGCTTTGCTT GCAACCAATG GTAACGTTAA 
    CGCTGCTGTA GAACGACTCT TGGGGAGTAT TGGCCAGTAA CATACAGGAT 
    CGCGAACTTG TGGATAGAAA AGCCGCTCAT CGATACACTA TTTGTTTTCA 
    ATGGTCATCT TCTTTCCTCT TTACCCAATC CCCACAACCT TTTTTACATA 
    CTTTGGGTCG TCTGTTATCT TTCAGATTCT ATTTGAAGTT GTTACCTCGT 
    ACATCTGTAG AAGTTGATTT CGAAATGTGG AATGGTTACA TTTACGTT

    Gene models with high sequence identity

    1. AT2G17190.1 [+] show detail - ubiquitin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-like 2.7e-24
    superfamily UBA-like 1.4e-08
    Gene3D no description 2.8e-18
    HMMSmart Ubiquitin 2.4e-18
    HMMSmart Heat shock chaperonin-binding 4.6e-06
    HMMSmart Heat shock chaperonin-binding 2.4e-10
    HMMSmart Heat shock chaperonin-binding 1.4
    HMMSmart Heat shock chaperonin-binding 3.6e-06
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 9.8e-08
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 14.137
    ProfileScan Ubiquitin supergroup 21.372
    HMMPanther Ubiquilin 3.2e-163
    HMMPfam Ubiquitin 5.1e-20
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 1.1e-10

    See the detailed result >

    AT2G17190.1

    Model type
    Protein coding
    Short Description
    ubiquitin family protein
    Computational Description
    ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquilin (InterPro:IPR015496), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT2G17200.1); Has 11292 Blast hits to 6186 proteins in 743 species: Archae - 6; Bacteria - 243; Metazoa - 4778; Fungi - 1683; Plants - 2450; Viruses - 166; Other Eukaryotes - 1966 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR