F25812

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25812

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25812

Determination of introduced cDNA(s)

RAFL06-77-I03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-77-I03 - Resource: pda03678

full reading [+] show sequence

TGATCTCCAA AATCATTTCT CCTCAAATTT CTTCTTTAGA AGATTAAAAA 
TCTTCTCTCT AATCTCTCCA CTCTTTCATA AATATTTTCC TAATTCTTCT 
ACCTTGGTGT CTGATTCTAG CACCAAACCA TTTTCTCCTA CCAAAATCTG 
GGTTTCGATC AATTTTAGGT CTTTTGATTC CTACTTGTCT AATCGTCTTG 
CAATTTCAAA GATGACAGTT GTTGGAGATG TTGCTCCAAT TCCAAGGAGG 
AACAGTTCTA CTTGCTCTAA TGATATCGCT GCTCCGTTAT TACCAGAGTG 
TCATGGAGAT GAAGTTGCTC ATGATGAATT CAATGGAGCT TCTTTTAGTG 
GCGCGGTTTT TAACCTCGCC ACGACTATAA TTGGTGCTGG TATCATGGCT 
TTGCCTGCTA CAATGAAGAT TCTTGGACTT GGACTTGGAA TCACGATGAT 
TGTTGTTATG GCTTTCTTGA CTGATGCGTC GATTGAGTTC TTGCTTAGGT 
TTAGTAAAGC TGGGAAGAAT CGATCTTACG GTGGTTTAAT GGGTGGTTCT 
TTTGGTAATC CTGGAAGGAT TTTGCTTCAA GTCGCGGTTT TAGTTAATAA 
CATCGGTGTT TTGATTGTAT ACATGATCAT TATAGGTGAT GTGTTGGCTG 
GAAAGACGGA AGATGGTATC CATCATTTCG GTGTTCTCGA AGGATGGTTT 
GGTCACCATT GGTGGAATGG AAGAGCTGCT ATTCTTCTGA TTACTACTCT 
TGGTGTGTTT GCTCCATTGG CTTGCTTCAA GCGAATCGAT TCTTTGAAAT 
TTACATCGGC CTTATCCGTG GCTCTGGCGG TTGTGTTTCT CATTATTACT 
GCGGGAATTT CAATTATGAA GTTGATCAGT GGCGGTGTGG CGATGCCAAG 
ATTGTTACCA GATGTTACTG ACTTAACATC TTTCTGGAAT CTCTTCACAG 
TCGTACCTGT TCTTGTCACA GCATTCATTT GCCATTACAA TGTTCACAGT 
ATACAGAACG AGCTCGAAGA CCCCTCTCAG ATAAGACCTG TTGTTCGATC 
AGCACTTATG CTCTGCTCAT CTGTTTACAT AATGACAAGT ATTTTCGGGT 
TCCTCTTGTT TGGTGATGAT ACTCTTGATG ATGTCCTTGC AAACTTTGAC 
ACTGATCTTG GAATCCCTTT TGGTTCTATC CTTAATGATG CGGTTCGAGT 
TAGCTACGCG CTTCATTTGA TGCTCGTGTT CCCGATTGTT TTCTACCCTC 
TTCGGATTAA CATTGACGGG CTCTTGTTCC CTTCCGCTCG ATCATTATCT 
ACCTCAAATG TGAGGTTCGG TTGCCTCACT GCCGGTCTCA TCTCTGTAAT 
CTTCTTGGGT GCAAACTTCA TCCCAAGCAT TTGGGATGCT TTCCAATTCA 
CTGGAGCAAC CGCCGCTGTT TGTCTCGGCT TCATCTTCCC AGCTTCTATC 
ATACTAAAGG ATCGTCATGA CAAAGCAACA AACAGGGACA CAACCTTAGC 
TATTTTCATG ATTGTTCTTG CGGTATTGTC CAATGCAATC GCCATTTACA 
GCGATGCTTA TGCGCTATTC AAGAAGAACG CTCCTCGTGA GTAAATCCCG 
GTATGAGAAA ATGTGCAGTT TGGTGTTTAG CTTTTGCTTT TTCTTCTATG 
GGAAATCAAA TAATGAAGAA GACAAGACTT CTCTTCTCTT ATATGTTTGT 
ACTTTTGTCG TTGAGTGTTC TAAGCGGACT TTTGCTTCGG TGTTATATAC 
CACCATGAGT GTTGTTTGTA AAAAAACTCT GTATAAAAAT TGTAATGCAG 
ATACATATTT TGCCTT

Gene models with high sequence identity

AT3G30390.1 [+] show detail - Transmembrane amino acid transporter family protein
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Amino acid transporter, transmembrane	2.9e-60
HMMPanther	AMINO ACID TRANSPORTER	3.4e-84

See the detailed result >

AT3G30390.1

Model type: Protein coding
Short Description: Transmembrane amino acid transporter family protein
Curator Summary: Encodes a putative amino acid transporter.
Computational Description: Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G38820.1); Has 4285 Blast hits to 4220 proteins in 397 species: Archae - 8; Bacteria - 394; Metazoa - 1411; Fungi - 683; Plants - 986; Viruses - 5; Other Eukaryotes - 798 (source: NCBI BLink).
Link: InterPro Scan - TAIR