F26538

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26538

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26538

Determination of introduced cDNA(s)

  • RAFL09-37-J04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-J04 - Resource: pda08268

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-J04 - full reading 
    AAACATTTCT CTCTTTTTTC TCTAATCACC AAACCTGCGT CTTCTCTCTC 
    ACACTACTAA CAACACTTCC TTCTTCTTCT TCCGACTATG GATAAGAAGC 
    ACGGCTTGTT CTCCAAGTCT AATTCCCGGC GACCACGATC CAAGAGTCCA 
    GTCAGAAGCG TCTCTCCGAT CATCATCCGT CGCCGGAAAG GCCGTTACGT 
    CACACAACCG GACCGGCACA TGTCTGAGAT GCTTGCTCCG GTTATAGAAG 
    GTCCTGATCC AGACGCTGAA GACTCCGGAA GCAGTGGTGA TTACTCTAGG 
    TTCGAGAGAC GTTGGTACAA TTGGATGAAA TGTCAGCTTC CGGTGGCTCC 
    GCCGTCAGTA TCGTCCTCTT CGGATTTCAA ACGAACGGAT CTGAGGCTTC 
    TCCTCGGTGT TCTTGGCGCA CCTTTAGGTC CTGTGCACGT TAGCGCTCTG 
    GATCTCCTTC CACACCTCAG TATCAAGAAT ACACCTATGG AGACTTCCTC 
    TGCTCAGTAC ATACTTCAGC AGTATACGGC TGCATCAGGA GGTCAAAAGC 
    TTCATAGTTC TGTGCAAAAT GGATATGTTA TGGGAAGAAT CAGGACGATG 
    GCTTCAGAGT TTGAGACAGG CTCAAAAGGT TCAAAGAGCA AGAATAATTC 
    GTCAAAAGCT GTTGAGTCTG GAGGATTTGT GTTGTGGCAT ATGAATCCTG 
    ATATGTGGTA CATGGAGCTT GTTCTTGGTG GGAGCAAGGT TCTTGCAGGT 
    TGTGACGGGA AGCTTGTGTG GAGACACACA CCATGGCTTG GACCTCATGC 
    TGCAAAAGGA CCGGTTAGAC CATTACGACG TGCTCTGCAG GGACTTGACC 
    CGAGGACCAC AGCGTATATG TTTGCAAATG CAAGGTGCAT AGGAGAAAAA 
    AAGATCGATG GAGAAGACTG TTTCATTCTC AAGCTATGTG CAGACCCGGC 
    AACACTCAAA GCTAGAAGCG AAGGGGCATC AGAGACCATA AGACATACGT 
    TGTTCGGTTA CTTCAGCCAA AAAACCGGTC TGCTTGTTCA CTTAGAAGAC 
    TCCCAGCTAA CCCGAATCCA AAACAATGGA GGCGAAGCGG TTTACTGGGA 
    GACGACCATC AACTCATACC TAGAAGACTA CAAACCTGTC GAAGGTATCA 
    TGATAGCTCA CTCTGGTAGA TCCGTGGCTA CGCTTTTAAG GTTTGGAGAT 
    ATGTCATCAG GACATAACAC TAAGACCACA ATGCAAGAAG CATGGGTCAT 
    CGATGAAATC TCGTTCAATG TCCCTGGCTT GTCTATAGAT TGCTTCATTC 
    CACCTTCAGA ACTCAGATTT GATTCCCACG TTGAAGACTT ATCTCAAGGC 
    CCCAAAATTA GGACATTGCA CGGCCATAAA AATGGTTGAT GTGAAGAAGC 
    AGGAGATCAA TGTGTATAAC TCATTCAAAA ACAAACCCTA GACCGGTTAT 
    TTTACTTTTG CTATTGTCGA AGCTAAAATT CTTGTAGGAA GTTTCGTTGA 
    AGTTGTAAAT AGACAGCAGG AGAAGTTCGT TCTTTTTGCC GCATAATGTT 
    AGGAATGTGT AGTCTTAGTA AGGTCAGTCC AATTTTTAGT TTATAATATT 
    GTTTCATATA CTATAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G27690.1 [+] show detail - Protein of unknown function (DUF620)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G27690.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF620)
    Computational Description
    Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glycerol biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT3G19540.1); Has 217 Blast hits to 215 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR