F27431

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27431

Determination of introduced cDNA(s)

RAFL06-67-J12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-J12 - Resource: pda17214

full reading [+] show sequence

CCGATTCTCT CTCTCTCTCT CTCTCACAAT TACTGATCGG TTCTGAAATT 
TGTAGCTATG CAGGCAACGG CTTTATCATC TGGGTTCAAT CCTCTAACGA 
AACGTAAAGA TCACAGATTT CCCAGGTCAT GCTCTCAGAG AAATTCTCTG 
TCTTTGATTC AATGCGATAT AAAAGAGAGA TCTTTCGGAG AGTCTATGAC 
GATCACGAAT CGTGGATTGA GTTTTAAGAC GAATGTGTTT GAGCAAGCTC 
GTTCTGTGAC TGGAGACTGT TCTTATGATG AAACTTCAGC TAAAGCACGT 
TCTCATGTTG TTGCAGAAGA TAAGATTGGT GTCTTGCTTT TGAATTTAGG 
TGGTCCTGAA ACTCTTAACG ATGTTCAACC TTTCTTGTAT AATCTCTTTG 
CTGATCCGGA TATTATAAGG CTTCCTAGAC CATTTCAGTT TCTTCAAGGG 
ACTATAGCTA AGTTTATATC TGTTGTTCGT GCTCCGAAAT CTAAAGAAGG 
GTATGCTGCT ATTGGTGGTG GCTCTCCTTT GCGTAAAATA ACTGATGAGC 
AAGCGGATGC TATTAAGATG TCTTTGCAAG CGAAGAACAT TGCTGCTAAT 
GTCTATGTTG GTATGCGGTA TTGGTATCCG TTCACTGAGG AGGCTGTTCA 
GCAGATAAAG AAGGACAAAA TTACTAGACT TGTTGTACTG CCATTGTATC 
CTCAGTATTC TATCTCTACA ACGGGTTCAA GCATACGCGT TCTCCAAGAT 
TTATTCAGGA AAGATCCGTA CCTAGCTGGA GTGCCGGTAG CTATTATAAA 
GTCCTGGTAC CAAAGGCGAG GCTATGTCAA TTCTATGGCT GACCTCATTG 
AGAAGGAGCT TCAAACTTTC TCTGATCCTA AGGAGGTTAT GATATTCTTC 
AGTGCCCATG GTGTTCCGGT CAGCTACGTA GAGAATGCTG GAGATCCGTA 
CCAGAAGCAG ATGGAAGAGT GTATTGACTT GATAATGGAA GAGCTAAAAG 
CCAGAGGGGT TCTTAACGAC CATAAATTGG CATACCAGAG TCGTGTTGGC 
CCTGTTCAAT GGCTGAAGCC ATACACCGAT GAGGTTCTTG TCGACCTTGG 
TAAGAGTGGT GTTAAGAGTC TACTAGCCGT TCCAGTCAGT TTCGTGAGTG 
AGCACATTGA GACACTTGAG GAGATAGACA TGGAGTATAG GGAATTAGCT 
CTTGAGTCAG GGGTAGAGAA CTGGGGACGG GTACCCGCGC TAGGTCTCAC 
ACCATCCTTC ATCACCGACT TAGCTGATGC AGTGATAGAA TCACTTCCTT 
CAGCAGAAGC AATGTCAAAC CCAAATGCAG TGGTTGACTC AGAAGATAGC 
GAGTCGTCAG ATGCTTTCAG TTACATTGTC AAGATGTTCT TCGGTTCGAT 
TCTGGCTTTC GTCCTACTTC TCTCCCCAAA GATGTTCCAT GCGTTCCGGA 
ACCTATAGAA TCTCGTTGGT TTTGTGTTAA GTCTTTTCTT GGAGAAATGT 
CTTGGTTAAA TTCAATATAT ATAGTCCAAT CTATTGAAGT ACTAGTACAC 
CAGCTCTAAT AAGCTGATGT GGGTAAGTAG TTCAATAGAT TGGACTATGT 
ATATTAAATT TGACTAAGAG ATAAACTAGA GAATGGGAAT AAAGAATGAG 
AAACGGTATT AGAAAGTTCT TTGAGGAAAT TTAGATGTAT TTTAAATTGA 
AGATGCATTT AGCTATAAAC ATAGTGGCTA CGTTCCTCTT AGAGATGAGG 
AGAGAATTAT ATTCTATTAT TATTTGGTTT CTTTTCTTCG TTTTTGTATG 
GTTTCAATAC TTAATTGTCA AAAGTATCCT ATAATTTTGT TGTTCATAGT 
GTTAACTGTT AACAGAATAT AAAGCTTTTG AATAAAAAAA

Gene models with high sequence identity

AT5G26030.1 [+] show detail - ferrochelatase 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HAMAP	Ferrochelatase	36.404
HMMTigr	Ferrochelatase	1.6e-141
HMMPanther	Ferrochelatase	3.3e-151
Gene3D	no description	9e-65
PatternScan	Ferrochelatase, active site	0
superfamily	Chelatase	2.7e-108
HMMPfam	Ferrochelatase	6.3e-110

See the detailed result >

AT5G26030.1

Model type: Protein coding
Short Description: ferrochelatase 1
Curator Summary: encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins
Computational Description: ferrochelatase 1 (FC1); FUNCTIONS IN: ferrochelatase activity; INVOLVED IN: response to oxidative stress, heme biosynthetic process, tetrapyrrole biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferrochelatase, active site (InterPro:IPR019772), Ferrochelatase (InterPro:IPR001015); BEST Arabidopsis thaliana protein match is: ferrochelatase 2 (TAIR:AT2G30390.1); Has 7391 Blast hits to 7389 proteins in 2072 species: Archae - 19; Bacteria - 4136; Metazoa - 176; Fungi - 140; Plants - 115; Viruses - 0; Other Eukaryotes - 2805 (source: NCBI BLink).
Link: InterPro Scan - TAIR