F27617

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27617

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27617

Determination of introduced cDNA(s)

  • RAFL09-67-G19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-G19 - Resource: pda08667

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-G19 - full reading 
    TGGCGGATTC AGCTATTTGA GCAAAATTGA AAATCGCTCT GAAACCAAAA 
    ATGGAGAATC CGTCATCATC GGAAACTTCC GAGATTTCCT CCGTCGTTCA 
    TCCCAATGAC GGCGTTCATC CCAATGACGG CGTTCATCCC AATGACGGCG 
    TTCAACGCCA GGATCACGCC GTCCTTCCCG AAGTTCTTGA GCATCCTGGA 
    GCTGAGCAGA TAGCAGATAT GTCTGAGGAA GAAGTAAAGC GCACATTAGA 
    AGCTGTAGCA TCTACTGGGA AGTTCTGGCA GGACTGGGAG ATACTAAAGG 
    GAACGCTATC GTACTGGTTG AAGAAGGTTC TATCGGAATA TTCTGAGGCA 
    AAAATGACGG ATGAGCAACA AAAGGAAGCT CTTGGAGAAC CATATTCAGA 
    GCTGGTTAGT CGATTGGATG AAGCCCTTCT TAGATTCGAT GATGGACCTC 
    CATTTACATT GCAGAGACTC TGTGAGATCC TTTTGGCTGC AAGGAGCATC 
    TACCCAAAGC TCTCAAAACT CGCTCTTGCA TTAGAAAAGA ATCTGTTGGT 
    TACTTCTATG TTAGCCATCA GTACAGAGCC ACAATCACAA ACCACTGAGG 
    ATCCAAACAC AGCAACCTCA GAGACAATAA CATCTGCTGC AAGTTGCGAT 
    CCAAATGTAA TTGAGTCAAT GGGAGGCGAT AAGGATGAGA TAATGACAGA 
    GGTAGAAGAA GCAGATGTTG ATGACGCAAT GACTGTTGAC ATGGAAACAA 
    TCGATGAACC ATCAGAGACA ATGACGACCA CGAGTGAGAG TGAGACTCTA 
    AGCGAAAACA CTGCTGCACA ACCATTATCG GATTCAATGG TGGCAGAGGA 
    AGGAGATTCA CGGTTGCCTA CAACGTGTGC CTAGAGAGTC AAAGTTTGAA 
    CATTATCAGC TTTGAAAACT GATCTGGAAT ATAATGCTTG TTCTAGGATC 
    TTGATCTTGC ACTATATTAG TCTTAAGAAT ATTCTTGTTT TTGTGGAATT 
    TCTGGTTTAT CAGTAAAACG CATTTATCCT

    Gene models with high sequence identity

    1. AT5G17070.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Protein phosphatase 4 core regulatory subunit R2 (InterPro:IPR015267)...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam PPP4R2 7.3e-18
    HMMPanther PPP4R2-RELATED PROTEIN 2e-05

    See the detailed result >

    AT5G17070.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Protein phosphatase 4 core regulatory subunit R2 (InterPro:IPR015267); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR