F28340

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28340

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28340

Determination of introduced cDNA(s)

  • RAFL05-11-M03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-M03 - Resource: pda01236

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-M03 - full reading 
    ATTCGTATAA TTTTTCAGTA AATTATCTAA CCCTCTCGAT CCTCTCTCGC 
    CTGTTGAAAA AGCACGACGC AAGAGCTAAG GATCAAAAAG GAAGACGAAG 
    AAAGAGATGG ATCCAGACGC TGTTGCAAAG GCTTTCGTTG AGCACTACTA 
    CTCCACCTTC GATGCAAATC GTCCAGGGTT GGTTTCTCTA TACCAAGAAG 
    GATCCATGTT GACCTTCGAA GGCCAGAAGA TCCAGGGCTC TCAGAACATC 
    GTCGCTAAGC TCACCGGCCT CCCTTTCCAG CAGTGTAAGC ACAACATCAC 
    CACCGTCGAT TGTCAGCCTT CTGGTCCCGC CGGTGGTATG CTCGTCTTTG 
    TCTCCGGCAA TCTTCAGCTC GCTGGTGAAC AACACGCTCT CAAGTTCAGC 
    CAGATGTTCC ATTTGATATC GAATCAGGGA AACTACTACG TGTTCAATGA 
    CATATTCAGG TTGAACTATG CCTGAGGAAT TTGATGCCAG AGGTACATGG 
    AACCATTATT GGAAGCTGAA AAGAGAGTGG TGGAAAGTTT GGGACTATTC 
    AAAAACTGTT TGAGTTGGTT TTAGATTTGG AACATTAAGC TTTGTTTCAG 
    GTGGTTTGCT GTCTGTTTTT ATTTTAATCA ATGGAGCTAT TTGTTACTTT 
    GTTTGAGATG ACTCCTTTTG TTTTCGGGCA CTGAACCATG ATTCAGTAAG 
    GGTAAAACAA AAGATTTTTT GAAATACGGT TTTTTTTTT

    Gene models with high sequence identity

    1. AT1G27310.1 [+] show detail - nuclear transport factor 2A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NUCLEAR TRANSPORT FACTOR 2 5.2e-44
    superfamily NTF2-like 6.1e-42
    HMMPfam Nuclear transport factor 2 2.1e-37
    ProfileScan Nuclear transport factor 2, Eukaryote 31.771
    Gene3D no description 6.9e-38

    See the detailed result >

    AT1G27310.1

    Model type
    Protein coding
    Short Description
    nuclear transport factor 2A
    Curator Summary
    Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.
    Computational Description
    nuclear transport factor 2A (NTF2A); CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2B (TAIR:AT1G27970.1); Has 977 Blast hits to 977 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 243; Plants - 223; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR