F28824

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28824

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28824

Determination of introduced cDNA(s)

  • RAFL04-13-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-I18 - Resource: pda00391

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-I18 - full reading
    GTAAAACCCC AATCACCTCT TTACATGTGA CTTCCTTATT ACTCTCTTCT 
    TCTTATTTTC CTCCTCTTCT TCTTCGCTCT AGTTTCCCCC AACAATCGCC
    ATGGCAGCTT CGTCTCTCAA TCTCCTCCTC ATTCTCTCTC TTCTCACTTT
    CATTTCTCTC CAGAGATCTG AATCTCTTTC CGATAATCCA TCTCTCACTC
    TTCTACCCGA CGGATTCGAC TGGCCGATCT CTCACTCCGA TGAATTCGAT
    ATCATCGACG GTGAAGAAAG CTTCGAAGTT ACGGAGGAAG ACGACGGCGT
    AACAGATCGA CGGTCATTGT ACTGGCGGAG GACGAAGTAT TACATATCGT
    ACGGTGCATT GTCGGCGAAT AGAGTGCCAT GTCCTCCCAG ATCTGGAAGA
    TCGTACTACA CTCATAACTG CTTCAGAGCT AGAGGTCCCG TTCATCCGTA
    TAGCCGAGGC TGCTCGTCGA TCACTCGATG CCGGAGATAG ATGAAGAAAG
    CTTAAAACTC CATGGGCATT TTCGTAATTT TGCCAACCAT GGTTTATTAT
    TATGATGTTT GTATTTGTAA TGTTCGATGT TTGTTTGTAA ACCGTGATTA
    GTTACGTTCG TTAAACGGTA AACCCGGTGA TTATAATTAA AAAAAAAAAA
    AAAA

    Gene models with high sequence identity

    1. AT5G67070.1 [+] show detail - ralf-like 34
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G67070.1

    Model type
    Protein coding
    Short Description
    ralf-like 34
    Curator Summary
    Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
    Computational Description
    ralf-like 34 (RALFL34); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: rapid alkalinization factor 23 (TAIR:AT3G16570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR