F29009

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29009

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29009

Determination of introduced cDNA(s)

  • RAFL09-73-N02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-73-N02 - Resource: pda08735

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-73-N02 - full reading 
    GAAATAAAAA TAGCACAGGG GAGAGACAAA ATGAGATAAG GATTTGAAGC 
    CTCTCACCAC TCTCCTCGTT TTCGCTTCGT GCTTATTTGT CAAACGCGAA 
    CATTTCACCG AAACTTAGCG ACTTTTCTCG CTTTACTCTT TCTGGGAGCA 
    ATTTCTCAGA GCATAGGCGA GCTTAAAGGT GACAGTTCTT AGCTATGGCT 
    ACGATTACAC CTTCTTCTAT TAGCAATGCC TGGCTCATTC CTGGAGCTTC 
    TTTTACTGTA AAGAAGAGTG ATTGTTCCAT CAAATGTAGC TTTTCGCGTA 
    AAGCTGGGAA ACAGATTCTA TCATCAACGC AGAGACTTGT GTTACCTTTG 
    TCGACTTCAC TTAGATTGTT TCCTACACAT GGAAGGCAGT TTGTGTTGCA 
    TCCTCATCGT AGAGCTACTG GGACTGATGT TGTGGCGGCT GTAGAGGAAC 
    AAGATTCTAC TCCTGTTGTT GCGGAGGATA AAGAAACCGT GGCTAGTGAG 
    AAGTCAGATG CTCCTGCTCC AACATCTCAG TCAAGGGGAA CAGCAAGACC 
    TGGAAGGAAG AGTGAGATGC CTGCGGTTAA GAACGAGGAG CTGGTTCCTG 
    GAGCTACTTT CACTGGGAAA GTACGAGCTA TTCAGCCTTT TGGAGCTTTT 
    GTTGATTTTG GTGCTTTTAC TGATGGATTA GTCCATGTTT CTCAATTGAG 
    TGACAACTTT GTTAAGGATG TTTCGAGTGT TGTCACTATT GGACAAGAGG 
    TGAAGGTAAG GCTAGTGGAA GCTGACATTG AGTCAAAACG TATTTCTTTA 
    ACTATGCGTG AGAATGATGA TCCTCCTAAG CGTCAGTCTG GTGGTAGTGA 
    TAAGCCGAGA TCAGGAGGGA AAAGGGATGG TTCTAAAGGA GGAGGACAGA 
    GGAAGGGAGA AGGGTTTAAC TCAAAGTTTG CCAAAGGGCA GATGTTGGAT 
    GGAGTGGTCA AGAATTTAAC GAGGTCAGGA GCGTTTATAA CTATAGGAGA 
    AGGCGAAGAA GGGTTTTTAC CGACGGCTGA GGAAGCAGAT GATGGTATTG 
    GAAGCATGAT GATGGGTGGC TCTTCGTTGC AAGCTGGACA AGAGGTGAAG 
    GTTCGTGTGT TGAGGATAGC AAGGGGACGT GTTACTTTAA CAATGAAAGA 
    GGAAGATGAT GGTAAGTTTG ATGAAACAAC CACTCAGGGA GTTGTGCATA 
    CAGCCACAAA TCCGTTTATG CTTGCTTTCC GTAAGAACGA AGAGATTGCT 
    GCGTTTCTTG ACAAGAGGGA GGAAGAGGCA GAGAAGCCAC CTGTTGAGAC 
    ACCAGTAGAG CCTGAAGCTG AAGCCTCTGT CACCTCAGCT GAAGTCGAGG 
    AATCGGTATG TGTCCCAGCT GAAGTAACAA GTGAAGAGGT TCCCTCGTCA 
    GAAACTCCCA AGGTAGTAGA AGAAGAAGTG ATAGCTACCA AAGCTGAAGA 
    TGATTCGCCG GAAAAAGAAG AGCAAACGGA AACACTTGCT GCAGCAGCTG 
    AAGCTGAAGA GGTGGTTCCT CCAATTCCAG AAACCAAAAG TAAGTTGACT 
    AAAAATCACT AGATTGTAAT TTTTTTTGTG TGCTACTTCT CATATTGGTT 
    TATTATGATC AGTATCAGTT TATCAGAATC ATTTAAAAAG ATTATACAAT 
    GTTTGTATCT TAGAACTCTA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT4G29060.2 [+] show detail - elongation factor Ts family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S1, RNA binding domain 1.1e-18
    HMMPfam Ribosomal protein S1, RNA binding domain 3.5e-09
    Gene3D Nucleic acid-binding, OB-fold 5.9e-19
    Gene3D Nucleic acid-binding, OB-fold 1.5e-08
    superfamily Nucleic acid-binding, OB-fold-like 1.3e-22
    superfamily Nucleic acid-binding, OB-fold-like 8.2e-12
    ProfileScan Ribosomal protein S1, RNA binding domain 22.383
    ProfileScan Ribosomal protein S1, RNA binding domain 18.086
    HMMPanther TEX PROTEIN-RELATEDTRANSCRIPTION ACCESSORY PR 9.6e-21
    HMMSmart no description 2.6e-23
    HMMSmart no description 3.9e-11

    See the detailed result >

    AT4G29060.2

    Model type
    Protein coding
    Short Description
    elongation factor Ts family protein
    Computational Description
    embryo defective 2726 (emb2726); FUNCTIONS IN: RNA binding, translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor Ts, conserved site (InterPro:IPR018101), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: translation elongation factor Ts (EF-Ts), putative (TAIR:AT4G11120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR