F29323

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29323

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F29323

Determination of introduced cDNA(s)

  • RAFL15-32-P20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-32-P20 - Resource: pda13016

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-32-P20 - full reading 
    GTTTTTTCTC TGCTCATTTA CTATAACCAA CAAGGTCTCT TCTCTTCTCT 
    TCTCCTCTCT GCATCATTTT GATCCGATTC GATGGCTGCT CCACCTGCTA 
    GAGCTAGAGC CGATTATGAT TATCTCATTA AGCTTCTTCT CATCGGTGAT 
    AGCGGTGTTG GTAAAAGTTG TTTGCTTCTA AGGTTCTCTG ATGGCTCTTT 
    CACCACTAGC TTCATCACTA CCATTGGTAT TGATTTTAAG ATAAGAACTA 
    TTGAGCTTGA TGGCAAACGT ATCAAGCTTC AGATTTGGGA CACTGCTGGT 
    CAAGAACGTT TTCGAACCAT CACCACTGCT TATTACCGCG GGGCAATGGG 
    GATTTTACTG GTGTATGATG TCACAGACGA GTCATCCTTC AACAACATTA 
    GAAACTGGAT TCGTAATATT GAACAGCACG CTTCAGATAA TGTCAACAAA 
    ATCTTGGTAG GAAACAAAGC TGATATGGAC GAGAGCAAGA GGGCTGTGCC 
    AAAATCAAAG GGTCAAGCAC TTGCTGACGA ATATGGAATC AAGTTCTTTG 
    AAACAAGTGC CAAAACTAAT CTGAATGTGG AAGAAGTTTT CTTCTCCATA 
    GCAAAGGACA TAAAGCAGAG ACTCGCTGAT ACTGACTCTA GAGCAGAGCC 
    TGCAACGATC AAGATCAGCC AAACAGACCA GGCTGCTGGA GCCGGACAGG 
    CCACACAGAA GTCTGCATGC TGTGGAAGTT AATCAGTCCC AAAAGGCTCC 
    AAAGTTGAAG TGAAGTGAAA AACAGATTTA TCTTGGGGTG CTTTTGTATT 
    TTTTTTTCTT TTGATTATTT GTTCTTATTT GACTTCTTCT AGTTTGTTCA 
    TGAGGGTAAT AGAATCTTTT AAGAAATTTT TCCTTCTCAG ACAGATTCGA 
    TGTCACAGAA GCTGAATCTG TGACTGAATT GTTAATCTTT TACGCATAAC 
    TCTTCAAGTC TCTTCATAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT5G59840.1 [+] show detail - Ras-related small GTP-binding family protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 5.1e-68
    ProfileScan Small GTPase 38.149
    HMMSmart ADP-ribosylation factor 0.0026
    HMMSmart Ras small GTPase, Rab type 9.2e-107
    HMMSmart Ras small GTPase, Ras type 1.5e-34
    HMMSmart Small GTPase, Rho type 4.3e-14
    HMMSmart Ran GTPase 2.3e-10
    Gene3D no description 3.4e-68
    HMMTigr Small GTP-binding protein 6.7e-31
    HMMPanther RAS-LIKE GTP-BINDING PROTEIN 5.5e-103
    HMMPanther RAS-RELATED GTPASE 5.5e-103
    HMMPfam Ras 2.6e-66
    FPrintScan Ras GTPase 1.2e-46
    FPrintScan Ras GTPase 1.2e-46
    FPrintScan Ras GTPase 1.2e-46
    FPrintScan Ras GTPase 1.2e-46
    FPrintScan Ras GTPase 1.2e-46

    See the detailed result >

    AT5G59840.1

    Model type
    Protein coding
    Short Description
    Ras-related small GTP-binding family protein
    Computational Description
    Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8A (TAIR:AT3G46060.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR