F30017

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30017

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30017

Determination of introduced cDNA(s)

RAFL19-76-L24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-76-L24 - Resource: pda11567

full reading [+] show sequence

TCTTTCTCTC AAACACACAC CCACTCATGG CGTCTCGGAG AGTCTTATCA 
TCTCTTCTCC GTTCATCTTC CGGTAGATCT GCCGCCAAAT TAGGCAACCG 
TAACCCCAGG CTTCCTTCTC CTTCACCCGC GCGTCACGCC GCTCCATGTA 
GCTACCTCCT CGGCCGCGTC GCCGAGTACG CGACCTCTTC ACCTGCAAGC 
TCAGCTGCGC CATCTTCTGC TCCTGCTAAG GATGAGGGGA AGAAGACCTA 
TGATTACGGT GGCAAAGGTG CGATCGGGCG TGTTTGCCAG GTCATTGGTG 
CCATTGTCGA TGTGAGATTT GAGGATCAGG AAGGATTGCC ACCAATCATG 
ACATCTCTCG AGGTGCAGGA TCACCCCACA AGGCTAGTGC TTGAGGTGTC 
TCATCACTTG GGTCAGAATG TCGTCAGGAC CATTGCTATG GATGGTACTG 
AGGGTCTCGT TCGTGGAAGG AAAGTCCTCA ACACTGGCGC TCCAATCACT 
GTACCTGTCG GAAGGGCTAC TCTTGGACGT ATCATGAATG TTCTTGGAGA 
ACCTATTGAC GAAAGAGGCG AAATTAAGAC CGAACATTAC TTACCTATTC 
ACAGAGATGC ACCGGCTTTG GTTGATCTAG CTACTGGGCA AGAGATCCTG 
GCCACTGGTA TTAAGGTTGT TGATCTTCTT GCTCCTTACC AAAGAGGAGG 
AAAGATTGGT CTCTTTGGCG GTGCTGGTGT TGGGAAAACT GTGCTTATTA 
TGGAGCTGAT CAACAATGTT GCCAAAGCTC ATGGTGGTTT CTCTGTGTTT 
GCTGGTGTGG GAGAACGAAC CCGTGAAGGC AATGACTTGT ACAGAGAAAT 
GATTGAGAGT GGTGTCATCA AGCTAGGCGA AAAGCAGTCT GAGAGCAAGT 
GTGCTCTAGT GTACGGACAA ATGAATGAGC CCCCGGGTGC CCGTGCCCGT 
GTTGGACTGA CTGGTTTGAC TGTTGCCGAG TATTTCCGTG ATGCTGAAGG 
CCAAGACGTT TTGCTTTTCA TTGACAACAT TTTCCGTTTC ACTCAGGCCA 
ACTCTGAAGT GTCTGCTTTA CTCGGTCGTA TCCCGTCTGC TGTGGGATAC 
CAGCCAACTC TGGCTTCTGA TCTTGGTGCT CTTCAAGAGC GAATTACTAC 
CACCAAGAAA GGGTCTATCA CCTCAGTCCA AGCCATCTAT GTACCTGCTG 
ATGATTTGAC TGATCCTGCT CCTGCTACAA CTTTTGCTCA CTTGGACGCC 
ACAACTGTGC TCTCAAGACA GATTTCTGAG CTTGGTATCT ACCCTGCTGT 
GGATCCTTTG GATTCAACAT CCCGTATGCT GTCACCTCAC ATTCTGGGAG 
AGGAGCATTA CAACACGGCT CGTGGCGTGC AGAAAGTTCT ACAGAACTAC 
AAGAACTTGC AAGATATTAT TGCAATTTTG GGTATGGATG AGCTAAGTGA 
AGATGACAAG TTGACTGTTG CCCGTGCCCG TAAGATCCAG AGATTCTTGA 
GTCAGCCGTT CCACGTTGCT GAGATCTTCA CTGGTGCCCC TGGAAAATAT 
GTCGACCTTA AAGAAAATAT CAACAGTTTC CAGGGTTTGT TGGATGGCAA 
GTACGATGAT CTTTCCGAAC AATCGTTTTA CATGGTTGGA GGTATCGATG 
AGGTGGTTGC AAAGGCAGAG AAGATCGCTA AAGAGTCAGC AGCTTAAGAG 
ATTGATTCAG ATCTTTCATG CTTAATACTT CTCTTTTTTT TCCTGACAAT 
AACGAAAAAA AAAAACCAAT GCGTGCGACT CTCCGACCAA ACGGAATCTG 
AGTTCCGTAA TTATAGTTTC TTTTGGTTCA AATTCCATGA GAGCTGGCAA 
GATGATACTG AACAGATCCA TTCACTGTTA ATCAAATTTT TGGTTGTTTT 
GCTTCCTTTG TTGAAATAAA GATGAAAAAT CTTGCAGATC

Gene models with high sequence identity

AT5G08670.1 [+] show detail - ATP synthase alpha/beta family protein
E-value: 0; Score: 99.95

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	4e-24
Gene3D	no description	2e-98
Gene3D	no description	1.5e-51
HMMPanther	ATPase, F1 complex, beta subunit	2.3e-274
HMMPanther	ATP SYNTHASE	2.3e-274
HMMTigr	ATPase, F1 complex, beta subunit	1.4e-289
HMMSmart	ATPase, AAA+ type, core	5.1e-07
PatternScan	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site	0
HAMAP	ATPase, F1 complex, beta subunit	56.926
superfamily	P-loop containing nucleoside triphosphate hyd	3.9e-96
superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	2.2e-52
superfamily	ATPase, F1/A1 complex, alpha/beta subunit, N-terminal	7.4e-27
HMMPfam	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	2e-62
HMMPfam	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	2.4e-25
HMMPfam	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	1.6e-16
HMMPfam	ATP synthase, F1 beta subunit	1.8e-16

See the detailed result >

AT5G08670.1

Model type: Protein coding
Short Description: ATP synthase alpha/beta family protein
Curator Summary: Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.
Computational Description: ATP synthase alpha/beta family protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, copper ion binding, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, plasma membrane, chloroplast, mitochondrial respiratory chain complex I, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1 complex, beta subunit (InterPro:IPR005722), ATP synthase, F1 beta subunit (InterPro:IPR020971), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase alpha/beta family protein (TAIR:AT5G08690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR