F30129

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30129

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30129

Determination of introduced cDNA(s)

  • RAFL09-47-D20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-D20 - Resource: pdz87836

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-47-D20 - 5 prime EST 
    GACATAAACA CTCCACACGC TCTGCTTCGT CCAATCACCA AACACGCTTT 
    AATGACTCTC ACGTTTTCCT CCTCCGCCGC AACCGTTGCC GTTGCTGCTG 
    CAACCGTAAC CTCCTCCGCT AGGGTTCCGG TTTATCCACT CGCTTCGTCG 
    ACTCTTCGTG GATTAGTATC TTTCAGATTA ACCGCGAAGA AGCTGTTTCT 
    GCCGCCTCTT CGTTCTCGCG GCGGCGTTAG TGTGAGAGCC ATGTCTGAGC 
    TTGTTCAGGA TAAAGAATCG TCCGTCGCGG CGAGCATTGC TTTCAATGAA 
    GCCGCCGGTG AGACGCCGAG TGAGCTTAGT CATTCCCGTA CTTTCTTGGA 
    TGCGCGAAGT GAACAAGATC TTTTATCTGG TATCAAGAAG GAAGCTGAAG 
    CTGGAAGGTT GCCAGCAAAT GTTGCAGCAG GAATGGAAGA ATTGTATTGN 
    AACTACAAAA AATGCAGNTT TAAGTAGTGG AGCTTCCANG GCAGATGAAA 
    CTGTTGCATC AAACATGTCT GTTGCTTT

    Gene models with high sequence identity

    1. AT1G32200.2 [+] show detail - phospholipid/glycerol acyltransferase family protein
      E-value: 0; Score: 99.05

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-47-D20 - 3 prime EST 
    AATATCTCCA TTTTTTTTTT TTTTGAGTAT TTTCCATTGA TTGTGTTTGT 
    GTATCCTGCA AATGAAAGAA CAATGCTCTC TCTCTCAATA TATATACAGT 
    TGCAACAAAA CTTCTGAGAC AGAAGATTTA TGAGTTTTGA AAGTGTTACC 
    CTAAAAGGAG AGACTAATTC CAAGGTTGTG ACAAAGAGAC CCTTGAAGTT 
    GATGCTTCTA CTCCTCTTCT GTGTTTAATC GCACAGTTTA AGATCTCGTA 
    TTGTTCATTC ACCGACTTGT ACAAAGCTTG GCTGTATGCT TCTTTCGCCT 
    CATTAGGGCT CTCGCAGTCT GCTGTGACGT CTGAGAAGTT GATTTCAGGA 
    GCAATTGATA GTCCAGTACC GTGAAAACCA ACTAATCTTT TCTCTCCGAT 
    TC

    Gene models with high sequence identity

    1. AT1G32200.2 [+] show detail - phospholipid/glycerol acyltransferase family protein
      E-value: 0; Score: 99.20

    AT1G32200.2

    Model type
    Protein coding
    Short Description
    phospholipid/glycerol acyltransferase family protein
    Curator Summary
    Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.
    Computational Description
    ATS1; FUNCTIONS IN: glycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: phosphatidylglycerol biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Glycerol-3-phosphate O-acyltransferase (InterPro:IPR016222); Has 391 Blast hits to 391 proteins in 121 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR