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GT13378

CSHL Arabidopsis genetrap mutant lines

Original: GT13378

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13378

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 920188 [Map]; Strand: w
      • AT4G02075.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -3712; Region: intergenic
      • AT4G02080.1 - [+] show detail - secretion-associated RAS super family 2
        Distance: -1266; Region: intergenic
    Flanking Genome Sequence: GT13378 - 5-prime edge 
    CCTACTTTCT CCCTGCAATA GTACTAAAAA ACTTTATTAT TCTAAAAATA 
    GCATTTTCTT TTGAAACTTC CAAAAATAGT ATATAAAAAT TTTAATCCTT 
    TATAAATTAA TTCAATAATA AAGTTTTTTT TATTACCATT TGTATCAATC 
    TCCCAAATAA AAATGAGAGC AAACACTAAT CTAATATTAA ATTGAATCGA 
    AAACTTTTAA ATAGTGGAAA TATATACCCT AAATTGGAAA TAAAAAACCC 
    AAATATAATA CTACAAACTA ATTTTAAAAT GAAAAATCTC TTTTAAATGG 
    TGAAAATATA TACCCTAAAT TGGAAATAGG AAACCCAAAT ATAATACCAT 
    AAACTTATAT TAAAATGAAT CAATATTTCT TTTAAATAGT TGAAATATCT 
    ACCCTATATT GGAAATAGAA AACTCAAATA TAATATTTTA AATTTATTTC 
    TAATTTATTT TGGTTGAATA GATTTTATAT AAACTTGTGG TATTATTATT 
    ATCCATAAAA CTTGTTTTAG TGTTACTTTT AAGAATTTTT CAAATAATTA 
    TTTGAGTGCT AATTATGTGT AAAAAACTTT TTAATGTTAT TTTTGTCCAA 
    AAAACTTAAA AGTGTGCTAT TTGTAGGAAT TTTTCAATAA GATATAAATT 
    TAAAACTGAG TTGATTAATT AAAAGCGT

AT4G02075.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
pitchoun 1 (PIT1); FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G02610.1); Has 1559 Blast hits to 1554 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 105; Plants - 585; Viruses - 28; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02080.1

Model type
Protein coding
Short Description
secretion-associated RAS super family 2
Curator Summary
A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
Computational Description
secretion-associated RAS super family 2 (SAR2); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G62560.1); Has 6784 Blast hits to 6782 proteins in 374 species: Archae - 2; Bacteria - 40; Metazoa - 3245; Fungi - 1245; Plants - 1081; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).
Link
InterPro Scan - TAIR