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Mutant Lines
GT13470

GT13470

CSHL Arabidopsis genetrap mutant lines

Original: GT13470

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13470

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 12337297 [Map]; Strand: w
- AT2G28760.1 - [+] show detail - UDP-XYL synthase 6
  Distance: 0; Region: exon7 (CDS)
- AT2G28760.2 - [+] show detail - UDP-XYL synthase 6
  Distance: 0; Region: exon7 (CDS)
- AT2G28760.3 - [+] show detail - UDP-XYL synthase 6
  Distance: 0; Region: exon7 (CDS)

AAACGGTAGA GGTATTTTAC CGACCGACGA CCGACCGTTT TCATCCCTAC 
TCTCAGGTGA AACTAATCTC CATCAAGTTC TTGAATTTAT CTTTTTTTTT 
TTTTTTTTTT GAAAAAAAAC CCCCAGAATT TTTGGGGCCA ACCCCAAAAA 
ATTTTTAAAC CCTTTTTTGT TAAAAAAATT TTTTTGGGGT CCGGGGGGAA 
AATTTTTTTT TTTTCAAAAA ACGGGAACAA ACCCCCCCCT TTTTTTTTTT 
TTTTCCAAAA GGGGTGGGGG GCCCCCCTTA AAAGGGGCCG GCGCCCCCTT 
TTTTTTTCAA AAAAAAAAAG GGGGAACACC AGGGGGAAAA AAAAAAAAAA 
AATTTTTACC CCCCCGGGGG GGGGGGGGGA AACCTCCCCC CCCCTTTTTT 
TTTTGGGAAC CCCCAAAAAA AAAAAAAAAA AAAAGGG

5 prime edge [+] show sequence

Chromosome: 2; Position: 12337387 [Map]; Strand: w
- AT2G28760.1 - [+] show detail - UDP-XYL synthase 6
  Distance: 0; Region: exon7 (CDS)
- AT2G28760.2 - [+] show detail - UDP-XYL synthase 6
  Distance: 0; Region: exon7 (CDS)
- AT2G28760.3 - [+] show detail - UDP-XYL synthase 6
  Distance: 0; Region: exon7 (CDS)

TGCTCACCAC GCGACCATCA TCAATGTTCA TACGAGGACC ATATGTGTTG 
AATATCCTCG CTATGCGTAT CTCTACAATG GCCAGACAAT AGAAGTAATA 
ACTAATCAGC CAATAAGCTT AAATCAAAGT TTTCAAGAAA ATGGTAAAAG 
AGTGATTAAT TTTACCAATC CCATGTTGCC TATGGTAATC AAACATAAGA 
GTCTCGGCAA CACGTTTTCC TTCATCATAA CAGCTTCTAA CACCTTATAA 
TGTGCCACCA GCAAATTCAT TTTGTGTTAG TTCATAAATT GATAAACTGA 
GATTATTACA AATAATAGTC ATATAATGAC TTACCGATCG GGTTTACATT 
TCCCCAATAG CTCTCGGTTT GAGGGTGAAC CAAAGGATCA CCATACACTT 
CAGATGTGGA AGTAAGTAAA ATTCTTGCTC CAACTCGCTT AGCTAGTCCT 
AACATGTTAA GTGTGCCAAT CACATTTGTT TTTATCGTCT GCCATTAGAA 
AGATGAAGAG GATATATGAT CATAAGTCAT AAAAATATAT CAGCTAGCAT 
TTTGCGAGTT TTGAGTAACG AAGTTTAACA AACCTTAACG GGGTTGTATT 
TGTAGAAAAT TGG

AT2G28760.1

Model type: Protein coding
Short Description: UDP-XYL synthase 6
Computational Description: UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 45408 Blast hits to 45356 proteins in 3037 species: Archae - 861; Bacteria - 26677; Metazoa - 782; Fungi - 385; Plants - 1435; Viruses - 88; Other Eukaryotes - 15180 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G28760.2

Model type: Protein coding
Short Description: UDP-XYL synthase 6
Computational Description: UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G28760.3

Model type: Protein coding
Short Description: UDP-XYL synthase 6
Computational Description: UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 45408 Blast hits to 45356 proteins in 3037 species: Archae - 861; Bacteria - 26677; Metazoa - 782; Fungi - 385; Plants - 1435; Viruses - 88; Other Eukaryotes - 15180 (source: NCBI BLink).
Link: InterPro Scan - TAIR