1. Home
  2. Mutant Lines
  3. GT13571

GT13571

CSHL Arabidopsis genetrap mutant lines

Original: GT13571

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13571

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14914467 [Map]; Strand: c
      • AT2G35490.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: -590; Region: promoter
      • AT2G35500.1 - [+] show detail - shikimate kinase like 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13571 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    GGCAAAGAGG TGGAATTAAG ATTGAGGTTA AAGACAGGTG AGATACTTTC 
    TCCAAAGGAT ATATCTGTTG ACGCAGATGG AACATCGTTA GCCGTTAAAG 
    AAAAGCGGAA TGGATTGCTG ATTACACTCC TAGAGACTAA CCATCTCTTT 
    GAGAAGATTA TGCCCTCTGA AACAATATGG TTAGCTACGT GTAAATCTTG 
    CATTATATGA CTTGTTTTTG TGATGTGTGA CATTTCCTTG AGGGCTGAAG 
    TTTTGGTTTT GATCCAGAAC AGGTACATAG ACGAAGATCA GTTGGTTGTG 
    AATATGAAGA AGGTGGATNG GGGAATTGAA GTGGCCTGAT ATTGTCGAGT 
    CCTGGGAGTC TTTGACTGCA GGAATGATGC AACTTCTTAA AGGTGCATCA 
    ATCTACATTG TTGGAGATTC AACTGAAATC AACCAAAAAG TGTCTCGAGA 
    GCTAGCCGTT GGCCTTGGGA TGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14235546 [Map]; Strand: w
      • AT5G36160.1 - [+] show detail - Tyrosine transaminase family protein
        Distance: -395; Region: promoter
    Flanking Genome Sequence: GT13571 - 5-prime edge 
    TTACAAGGAG ATAGAGAAGA GAGAAGAGAA GACCTAATCA GACAAGAAGA 
    AGAAGATCCA AAGCTTCTCA AAACGATGTC ATCCCATGTG ACAAAATGAG 
    AATGGGCCAA AC

AT2G35490.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: fibrillin (TAIR:AT4G04020.1); Has 422 Blast hits to 421 proteins in 82 species: Archae - 0; Bacteria - 91; Metazoa - 1; Fungi - 0; Plants - 314; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35500.1

Model type
Protein coding
Short Description
shikimate kinase like 2
Computational Description
shikimate kinase like 2 (SKL2); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), Shikimate kinase (InterPro:IPR000623), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); Has 380 Blast hits to 380 proteins in 88 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G36160.1

Model type
Protein coding
Short Description
Tyrosine transaminase family protein
Computational Description
Tyrosine transaminase family protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: tyrosine catabolic process to phosphoenolpyruvate, cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT5G53970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR