1. Home
  2. Mutant Lines
  3. GT14149

GT14149

CSHL Arabidopsis genetrap mutant lines

Original: GT14149

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14149

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 84483 [Map]; Strand: w
      • AT3G01270.1 - [+] show detail - Pectate lyase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT14149 - 3-prime edge 
    GCGTCATTAC GAGTAAGTCA AAATATTAGT ATCTCGATCT ATATATGCAT 
    TGTTTTTGAT CCTACCGATT TGTCTCGTTG AAATTAACCA GGGCTTGATT 
    GTAATCATTA GATAGATTAG TTTATTCTGA TTTCATTCAA ATTAAAATAC 
    AAATATTTAT TAGTAGAAGT TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 84766 [Map]; Strand: w
      • AT3G01270.1 - [+] show detail - Pectate lyase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G01280.1 - [+] show detail - voltage dependent anion channel 1
        Distance: -835; Region: promoter
    Flanking Genome Sequence: GT14149 - 5-prime edge 
    AATTTGAAAA GCCTAGCCGT CTCCATTTTA TTTGATTACC CCTTTCTTTT 
    ACGGAAAATA ATATCTTTTT TATTTTTTAA AAGGGGGTAA TCTTTTTATA 
    TATTGAAATA TATGTGGAGA ACTGCTAAGC TTTAA

AT3G01270.1

Model type
Protein coding
Short Description
Pectate lyase family protein
Computational Description
Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT5G15110.1); Has 1587 Blast hits to 1580 proteins in 266 species: Archae - 0; Bacteria - 700; Metazoa - 0; Fungi - 174; Plants - 701; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01280.1

Model type
Protein coding
Short Description
voltage dependent anion channel 1
Curator Summary
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description
voltage dependent anion channel 1 (VDAC1); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 3 (TAIR:AT5G15090.2); Has 888 Blast hits to 888 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 413; Fungi - 146; Plants - 300; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR