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GT14547

CSHL Arabidopsis genetrap mutant lines

Original: GT14547

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14547

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21217864 [Map]; Strand: w
      • AT5G52250.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14547 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT ACACAAACAC 
    TTGGTTATTC TCTGACCCGG ACACGACCAA ACCACCATGT CTCCAAACCG 
    ACAACCCAAC AAAGTTCCGG CTATTCACAT GCCCTCGGTA CGTGCGAACC 
    ACGCGCCGTC CATTATCTAT ATCCCATTGC TTCAAGCTCC CGTCGGTCGA 
    ACCGGTAACG ATCGTGTGAG AATCCATGAA TCGAGCATAC GTCACCGTTT 
    TGGTATGGCC GTCTAATACG ATCAAAGGGT CCACTAGTCT TCTGATGTCA 
    TACACGTAGG CATTCCGGTC AGCACATCCA ACGGCTATGG AAGATCCACC 
    GAACGGATCG AACTCTACCG AACAAATCGC CGCTCCACCA CCGGGCCTAA 
    CCATTTCTTC TAAACGTCCC TACGTTACGT GGATCCCACA TTTGAACCGT 
    TCCGTCGTCG GAGCCTGACG CGCCTATAAG AGAGCCATTG TAAAGCGTGT 
    AGTCCACGCT CCAAATCCTT CTACCTCCAT GT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 567458 [Map]; Strand: c
      • AT3G02645.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: 0; Region: exon1 (CDS)
      • AT3G02650.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -589; Region: promoter
    Flanking Genome Sequence: GT14547 - 5-prime edge 
    CTACTTTATC CCTGCTCTGT GTAACGAGTG AATACTAATG GTCCTGAAGT 
    GTTCGTAGCT TCGTAAGCGA CAAGGTTCCG AAGGACTGTT TCTGTGTTGA 
    TGTCTAGGTT TATTACAGGG AGGTAGAATT GGCCAGAGTT TGAATCGAAA 
    GTTACCGTTG AAATGTTACC GTGTGCTGTT GGTTTGAATC TAACTCCGGC 
    TTTGTGGAGA TCGGAGACTG ATGGGATTGT AAGTTCTTCC ACAAGAGGAG 
    GCTTTTCGAT ATCAAGAATC GAAACCGATT CTTGTCTCGT TGTTGTTGCT 
    TCGTTTTCTT GTCTTGTGAA GAGATAATCA GCTGAAAGTT TCAGAGCCAT 
    GAATCCAGGA AGATTCGATA TGATTCTCCA CGGGAATCTC AAGATTAAAT 
    CCGCAGGTCG AGACGCGAAA ACCCTTTTGA ATTGATGCTT AATCTCATCC 
    ATAAACCTAA TTGCTCTGTT TCCGCCATTT TCGTCTGCTC TGTTTTCTTC 
    GTCATCT

AT3G02645.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF247)
Computational Description
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50150.1).
Link
InterPro Scan - TAIR

AT3G02650.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62680.1); Has 34543 Blast hits to 12438 proteins in 283 species: Archae - 5; Bacteria - 31; Metazoa - 472; Fungi - 472; Plants - 32537; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G52250.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23730.1); Has 19305 Blast hits to 12811 proteins in 562 species: Archae - 16; Bacteria - 3753; Metazoa - 6674; Fungi - 4562; Plants - 2007; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).
Link
InterPro Scan - TAIR