1. Home
  2. Mutant Lines
  3. GT14641

GT14641

CSHL Arabidopsis genetrap mutant lines

Original: GT14641

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14641

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14641 - 3-prime edge 
    TAGAGGTATT TACCGACCGT TACCGACCGT TTTCATCCCT ATATACACAT 
    TCTACCCGAC CGGATCGAAT CGGTATATGC ATCTCGCTCT ACCACCGTTC 
    GTTTTCGTTA CCGGTATATC CCGTTTTCGT TTCCGTCCCG CAAGTTAAAT 
    ATGAAAATGA AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT 
    CATCCCTATA TACACATTCT ACCCGACCGG ATCGTATCGG TATATTCATC 
    TCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 700291 [Map]; Strand: w
      • AT4G01630.1 - [+] show detail - expansin A17
        Distance: -362; Region: promoter
    Flanking Genome Sequence: GT14641 - 5-prime edge 
    GGCCACTTTA CCTGTAATTA AACCACCCAT TGGCTAAATA TATATATAAA 
    AAACTTGGTT GACAAGAGAA ATAATATAAA ACGTAGGGAT AGTGAGCAAA 
    AGTGTATAAT ATTTGAAAGA AACTAAACAC AACTACCTAT AAGTCACATG 
    CACTTATAGG ATTTAACTTA ATTATCATAT GCTTGAAAAC TCCGTATTTT 
    TCGCACTTCT TATAATCATT GAATCAATCA TCACCAAATC ATATTATTAT 
    TTTCAACGTT TTCCGCTAAT TACAAGTCAT ATCTAATTAA TTTATGCATA 
    TATCTTAATC CAAACAAGCT CTTTGAGTTC TACTATAAAT AGCTGCTAAA 
    GCCTAAGTCT TATGCATCCA ACAATCTTCA AC

AT4G01630.1

Model type
Protein coding
Short Description
expansin A17
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin A17 (EXPA17); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A14 (TAIR:AT5G56320.1); Has 2142 Blast hits to 2139 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 24; Plants - 2075; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR