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GT14644

CSHL Arabidopsis genetrap mutant lines

Original: GT14644

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14644

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 699669 [Map]; Strand: w
      • AT4G01630.1 - [+] show detail - expansin A17
        Distance: -984; Region: promoter
    Flanking Genome Sequence: GT14644 - 3-prime edge 
    AGCTAGTATT ATCATTACAT AAATTAGTTC TTTGGTATAA GAATTATTAC 
    ATAGATGTAT AACCAAATGG CAAGTTGTCT TAATATTCGG CAATGAATGT 
    AGAATTCGAA TATCAAATTA TCAATGAGCT TTTGTTGAAA ATTCAACGTA 
    CGATTTATCT TTAAAATCAA CGTACGAAAT CAACTGATAA GTGCTCCTCC 
    ATTTACGGGA ATTCCGTGGT ACGTTGCAAG TTGCCAACTT ACGCTGATAA 
    CTAGATTATC TATTCAGTAT TTGGCATTTG AAGTTAACTG TTTTACAGTT 
    TATAGTTGAC TAAGTATAGG ACTGACTTTA AAATTCTATC TAAACCGAAC 
    AAAATATCAA AATCTCTATG TAGTTCCTCC ATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 700301 [Map]; Strand: w
      • AT4G01630.1 - [+] show detail - expansin A17
        Distance: -352; Region: promoter
    Flanking Genome Sequence: GT14644 - 5-prime edge 
    CCTGTAATTA AACCACCCAT TGGCTAAATA TATATATAAA AAACTTGGTT 
    GACAAGAGAA ATAATATAAA ACGTAGGGAT AGTGAGCAAA AGTGTATAAT 
    ATTTGAAAGA AACTAAACAC AACTACCTAT AAGTCACATG CACTTATAGG 
    ATTTAACTTA ATTATCATAT GCTTGAAAAC TCCGTATTTT TCGCACTTCT 
    TATAATCATT GAATCAATCA TCACCAAATC ATATTATTAT TTTCAACGTT 
    TTCCGCTAAT TACAAGTCAT ATCTAATTAA TTTATGCATA TATCTTAATC 
    CAAACAAGCT CTTTGAGTTC TACTATAAAT AGCTGCTAAA GCCTAAGTCT 
    TATGCATCCA ACAATCTTCA ACTTCTTCTC TAATCAAAAG TTAAAACACC 
    TAAAAAATTG AAAGAAAACA AAATGA

AT4G01630.1

Model type
Protein coding
Short Description
expansin A17
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin A17 (EXPA17); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A14 (TAIR:AT5G56320.1); Has 2142 Blast hits to 2139 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 24; Plants - 2075; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR