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GT14651

CSHL Arabidopsis genetrap mutant lines

Original: GT14651

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14651

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 919273 [Map]; Strand: c
      • AT2G03090.1 - [+] show detail - expansin A15
        Distance: -630; Region: promoter
    Flanking Genome Sequence: GT14651 - 5-prime edge
    ACTTTCTCCC TGATCAAACC GCCTGCGACC CTCCCATGTG CTTTCTCTCT 
    CTCCCTCTAG CTCACTACCA AATTTGTGTT AGGGATGCTC GTGATTATTT
    CAAAACTTTG CAGCTACATT TTAAAATCTT TACTTTTTTT CTTCTAAATA
    CCTCCAATAT AGTAGTAGAA ATCATCACAA GAAAGAAAAG AATCCGACCT
    TTTTTTCTTC TTGCTTTGGT GGAGGAATCC AACTTTTTGT GAAATTTAAC
    CATTGATAAA AACCTAAAAT TTTTGAAAAT TTAAAATTTT GTTGAAAAAT
    CAAAGTTTAC CTCTATATAT GTGTAACAAT AAATTATGAA ACGAATCATA
    AAAATAAATA TGAAAGTTAA TGTCAAACGT GTAAGAACAG GTGAACAAGC
    CAACAAATGT AACAAAACAT TCAATGATGT TTGGGTTTAT ATACTCCAAT
    AACTACCAAA ATAACCATTT CTTTTTTCTT TTTCTTAAAA CCATGTTTCA
    AAGTACATGC GCTTGTGCCC ATATGTTTTG CTGCAAAATA ATAAATTCAC
    CATTGAAACC CCTAAATATA ACTTTTTTTT

AT2G03090.1

Model type
Protein coding
Short Description
expansin A15
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR