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GT15420

CSHL Arabidopsis genetrap mutant lines

Original: GT15420

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15420

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1066651 [Map]; Strand: c
      • AT4G02420.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: -279; Region: promoter
    Flanking Genome Sequence: GT15420 - 3-prime edge 
    TAACTTGTCT TGTCACACAT TAATAGAGGC TTTGATCAGA GATGTACACA 
    CGGGTATCAT CTCATCTATG TGGGAGTGAC TATCGAGTGA AGCTGATGAG 
    TTAGTAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23505212 [Map]; Strand: c
      • AT5G58080.1 - [+] show detail - response regulator 18
        Distance: -1069; Region: intergenic
      • AT5G58090.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 154; Region: intergenic
    Flanking Genome Sequence: GT15420 - 5-prime edge 
    TTTCTCTCTG TCGACAGACT ACAGATTTGT ACAACTTCCA ATTCTTCATA 
    TGAAGTTTCC CTTTCTCCTT GCTCTCGTTC TTCTAGATAG GAAACTAGGA 
    GACGATTATC TAATTTCTTA ATCTTTGAGT CCAATTGGCA CTATGCACCA 
    CTCCAAAAAT AGTCTTTGAT CTGATTTCCA CTACGGCAGA GACTTCTGTT 
    CAGAGCTCAC ACAATCGACG ACGGCCACTG CTACTCTCGA GGAGCGCAAG 
    ACAACAAGTG TATCGGAGTT CATTCTCTAG AAGCAATCAA AAAGTTGAAA 
    TCGAGAGGCT TCTCACCTCT CCGTACGATT CATCTCTCTC GAGGAGGGGG

AT4G02420.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin protein kinase family protein
Computational Description
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G02410.1); Has 115117 Blast hits to 113792 proteins in 4484 species: Archae - 103; Bacteria - 12860; Metazoa - 42338; Fungi - 9449; Plants - 33733; Viruses - 419; Other Eukaryotes - 16215 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58080.1

Model type
Protein coding
Short Description
response regulator 18
Curator Summary
member of Response Regulator: B- Type
Computational Description
response regulator 18 (RR18); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 12 (TAIR:AT2G25180.1); Has 83273 Blast hits to 82938 proteins in 2948 species: Archae - 359; Bacteria - 74242; Metazoa - 38; Fungi - 293; Plants - 2583; Viruses - 2; Other Eukaryotes - 5756 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58090.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G31140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR