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GT15696

CSHL Arabidopsis genetrap mutant lines

Original: GT15696

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15696

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21535504 [Map]; Strand: c
      • AT5G53120.6 - [+] show detail - spermidine synthase 3
        Distance: 0; Region: exon2 (CDS)
      • AT5G53120.1 - [+] show detail - spermidine synthase 3
        Distance: 0; Region: exon2 (CDS)
      • AT5G53120.2 - [+] show detail - spermidine synthase 3
        Distance: 0; Region: exon2 (CDS)
      • AT5G53120.3 - [+] show detail - spermidine synthase 3
        Distance: 0; Region: exon3 (CDS)
      • AT5G53120.4 - [+] show detail - spermidine synthase 3
        Distance: 0; Region: exon3 (CDS)
      • AT5G53120.5 - [+] show detail - spermidine synthase 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15696 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    TAGAGAAGAC TGTACCTTCT TGTTGCCTTA AGGCTATGGC ATGTGTACCT
    GAGGATGATG CTAAGTGTCA CTCCACTGTT GTTTCTGGGT GGTTTTCGGA
    ACCTCACCCT CGCTCTGGTT AGACTTTGTT TTCTTTTCTG CTCACTCAAC
    TACCCTATTT TCTTAGATCC GATCTCTTAT TTTGGATCTT GTTCTTAATT
    GGATGCAGGG AAAAAAGGCG GCAAAGCAGT CTATTTCAAC AACCCTATGT
    GGCCAGGTAG GTTACCTCTT GATAGGCTTG TTGTTGTTGC TTTCCATTAT
    CTTACTACCT TACGTTTTTT GTCTTTGAAT GAGCGCCTAC TTGGTTTAGA
    TGCTGAATCT GTATGTTAAA GTTTGTGAGT TGTAGTTTTT CAGAGTGCTT
    GCTCATGTGA CTGATGCAGC TGGTTTATGT TTAATTGTAG GAGAAGCACA
    CTCACTGAAA GTTGAGAAAG TTCTGTTCAA AGACAAGTCG GATTTTCAGG
    AAGTCCTAGT GTTCGAGGTT TGAGATAGCA TCTATGCTTT TGTCCGAT

AT5G53120.1

Model type
Protein coding
Short Description
spermidine synthase 3
Curator Summary
encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
Computational Description
spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5367 Blast hits to 5364 proteins in 1535 species: Archae - 174; Bacteria - 2998; Metazoa - 341; Fungi - 210; Plants - 426; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53120.2

Model type
Protein coding
Short Description
spermidine synthase 3
Curator Summary
encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
Computational Description
spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5398 Blast hits to 5395 proteins in 1543 species: Archae - 175; Bacteria - 3028; Metazoa - 341; Fungi - 210; Plants - 426; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53120.3

Model type
Protein coding
Short Description
spermidine synthase 3
Curator Summary
encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
Computational Description
spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53120.4

Model type
Protein coding
Short Description
spermidine synthase 3
Curator Summary
encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
Computational Description
spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5367 Blast hits to 5364 proteins in 1535 species: Archae - 174; Bacteria - 2998; Metazoa - 341; Fungi - 210; Plants - 426; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53120.5

Model type
Protein coding
Short Description
spermidine synthase 3
Curator Summary
encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
Computational Description
spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5367 Blast hits to 5364 proteins in 1535 species: Archae - 174; Bacteria - 2998; Metazoa - 341; Fungi - 210; Plants - 426; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53120.6

Model type
Protein coding
Short Description
spermidine synthase 3
Curator Summary
encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
Computational Description
spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1).
Link
InterPro Scan - TAIR