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GT16019

CSHL Arabidopsis genetrap mutant lines

Original: GT16019

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16019

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12839666 [Map]; Strand: c
      • AT2G30080.1 - [+] show detail - ZIP metal ion transporter family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16019 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCT 
    CCAACCGCCT TACCCACCGG CATATACTCC ATCCCTCCGT CACCACCACC 
    ACCACCACCG TGTCCCATAT GTTCACTCGC CGTTAAATCA ACCAACAAAG 
    CCGTTATAGC TCCGATCATC GTAACTAAAC CAGCAAACGG AAAATCTTTC 
    CATGGATGAC GTGACGACAC TTGGCAATCA GCGAGTGACT CAAACGCTTC 
    CGGTAAAACG TGGACTAAAG ACGTCGAGAG AATCACGCCG GCGGCGAAAC 
    ACTTTATCAC AAGAATTGCT TTATCGTACA GAGGTTTACC ATGAAAGTAT 
    TTAGCGAGTA AAACTGGTCC CCAAACTCCG AAAACGCTTG TGAGAAAGAT 
    GGCGAAGACG GCGACTATCT TTAGATGAGA GGCTTCTTCG CCGTCTCTAC 
    ATGCCGCTGC TCTGATTGCT GCCTCTGTTC CGGTGACGCA AGAAGCCATT 
    TGTGGAAGAA GAAGAAAGAG AGGGAGAGAG AGATTAGTGC GCGGACCACT 
    TACACGTCAA ACGGTTATAA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12839612 [Map]; Strand: c
      • AT2G30080.1 - [+] show detail - ZIP metal ion transporter family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16019 - 5-prime edge 
    CCTACTTTCT CCCTGGTTGG AGGGTTAGAA ATGAAAGAAG GAAAGTGTGG 
    GGCTGATTTG GAAATACAAG AAAATAGTGA GGAGGAAATT GTGAAGATGA 
    AACAAAGATT AGTGTCACAA GTTCTTGAAA TAGGGATTAT ATTTCATTCG 
    GTGATAATTG GAGTAACAAT GGGAATGTCA CAAAATAAGT GTACCATTAG 
    ACCTTTGATT GCTGCACTTT CTTTTCATCA GATTTTTGAA GGTTTGGGTC 
    TTGGTGGTTG CATTGCTCAG GTTTGTTTCT TTCTTCATTT CTTTTTATTT 
    TCGGTAAACT AGTTCTCACA AATTTAATTA GTGTTGAATT AGTTAGGAGA 
    GAATAATAAA TACTATGAGA AAAAACTAGT TGGTTCTGAC TTTAGACATA 
    ATAATATTTT AAGAAACCTA GAAGAAGTAA TAGTAATATG TAGATGTTGA 
    CATTTTTGCA TATCATAGAA TGTGACATTC TAATTTAGAG CAGCTCATGG 
    ACCATATCAA AACCATACCA ATAATCCAAA AAACCGAACC AATATAACAT 
    TTTGTGAGTT TCATTGATAG TTTTTTGGTC CTTAGGATAA AACTTAGGAT 
    TGATGAGTGG TATTGTTTGA TGGTCAGGCT GGGTTTAAGG CAG

AT2G30080.1

Model type
Protein coding
Short Description
ZIP metal ion transporter family
Curator Summary
member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.
Computational Description
ZIP6; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 7 precursor (TAIR:AT2G04032.1); Has 1739 Blast hits to 1619 proteins in 263 species: Archae - 0; Bacteria - 69; Metazoa - 337; Fungi - 628; Plants - 518; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
Link
InterPro Scan - TAIR