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GT16266

CSHL Arabidopsis genetrap mutant lines

Original: GT16266

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16266

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6750228 [Map]; Strand: w
      • AT4G11050.1 - [+] show detail - glycosyl hydrolase 9C3
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16266 - 3-prime edge 
    ACGGTAGAGG TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTCT 
    GCTGAGCTAC TCCGTCACGC ACATCAGGTT CTTAAACCCT AACCAAAAAA 
    CAGAATTAAA TAAGAAACCT GAGTTTAAAT TTCGGTTTAG TGAAATTGAG 
    TTTTAGAGCA TCTCCAACCC ATATCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6750277 [Map]; Strand: w
      • AT4G11050.1 - [+] show detail - glycosyl hydrolase 9C3
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16266 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GCAGCAGAGT ATGATGGATC AGAGCGATGG 
    AAAACGATGG ATGCGGCAGC CATTGCGGCA GCGGTTTCTC CGGCGAGATC 
    CGAACCGGGA TTGTTCCGGT CAATTTTGTA AGCCCTACGA TCAGTAGTCA 
    TTTCCTCCGG CCTTTGCCAA CAATAATGGT CCGACTTACC ATCCCCTACC 
    TTCACAGTTA CAAAATAATT ACCATAACCA AATTGAAATT ATGTAAATAG 
    TTAGTCTAAT TAATAAAGAA AGTGATTAGT GATTAGAGTG TTATTATTGT 
    TACCTCTCCA TAGAGAACGT TAGGTTCAGG GTGGGCTTTA ATGAAATAAT 
    CAGTTCCCCA CTTAACGGCG TCAATGGCAT GGCCAAGTTC GCCGTTGGAT 
    TCCAGCTGGC CACCGTATTC TATGATGCTC CAACACATTC AT

AT4G11050.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9C3
Computational Description
glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR