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GT16413

CSHL Arabidopsis genetrap mutant lines

Original: GT16413

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16413

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25537245 [Map]; Strand: c
      • AT5G63810.1 - [+] show detail - beta-galactosidase 10
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16413 - 3-prime edge 
    CGGTAGAGGT ATTTTACCCA CCGGGACCGA ACGGTTTTTT CCCTAGATCA 
    AGAATCGGGT TACTACTGAA AGCATTGCGT CTACGGCGAT ACTGGTGGTG 
    ATGGTGTTTC TCTTCTCGTG GAGATCTATC GAGGCGGCGA ATGTATCCTA 
    CGACCACCGT TCTCTCACCA TCGGCAATCG CCGTCAGCTC ATTATCTCCG 
    CCGCCATTCA CTATCCCAGA AGCGTCCCTG CTGTTAGTGA CTTCTTCTTT 
    TTCTTCCTTT GTCTTTGATT TTATCACTTG GTGAATGCTA AAGTTGAAAG 
    CTTTTTGGAT TTGTGCTTTA TGCTCACATT GAATCGAACA AAGTTTCGAG 
    CTTGTGAGGG TTTAGTTGAG GGAGATTCTA GAATCAGTCT CTAAGAGACA 
    TTTAAAATCA TGGGTTTGAT GGGAAATTTC TAAATTTCTT GCATTTTCCA 
    TCCTCTTCTC AAAATGATTA AGAAAATGCA ATTTCAGTTC TTTAGTTATG 
    AGTTTGGATG ATTTAGGCCT CTGTTCTTAA ATTGTGCTTT ATTCTCAATT 
    TCATCCTCAA TTGATTTTTT GTTGTAGATG TGGCCATCTC TTGTTCAAAC 
    AGCAAAAGAA GGAGGCTGCA ACGCAGTCGA GTCTTATGTC TTCTGGAATG 
    GCCATGAGCC ATCTCCTGGA AAGGTTCT

AT5G63810.1

Model type
Protein coding
Short Description
beta-galactosidase 10
Curator Summary
member of Glycoside Hydrolase Family 35
Computational Description
beta-galactosidase 10 (BGAL10); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to karrikin; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 8 (TAIR:AT2G28470.1); Has 2086 Blast hits to 2065 proteins in 466 species: Archae - 15; Bacteria - 851; Metazoa - 358; Fungi - 207; Plants - 597; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR