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GT16660

CSHL Arabidopsis genetrap mutant lines

Original: GT16660

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16660

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 900347 [Map]; Strand: c
      • AT4G02050.1 - [+] show detail - sugar transporter protein 7
        Distance: 0; Region: intron1 (5UTR)
      • AT4G02060.2 - [+] show detail - Minichromosome maintenance (MCM2/3/5) family protein
        Distance: -289; Region: promoter
      • AT4G02055.1 - [+] show detail - pre-tRNA
        Distance: -829; Region: promoter
    Flanking Genome Sequence: GT16660 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTTTTAAAC TATGGATTCG 
    TGTTTGGTAC ATAATTGTTT GGAATTAAGT TCCAACAAGT AAATACGTCA 
    TTTTCTTGAC CTTATCTTCA CATAACAAAT TAAAAATTTA ATACTGATTT 
    TGCATGTCTT CCTCCTACTT TGATGTCTAT TTCCACAAAA ATCATCAATG 
    CTCGTTGGAA TATTGTCAGA ATATACTAAT GCTATATAAG AAAACAAATA 
    CAAAAAGAGA TTTTATACTT TTTTGGTCAA ATGTCATCTT CATAATAAAA 
    AAAAAGATTA CGATCTTATC CCGTTCTAAC AAGTAACACC TCGAAAAAAA 
    AAAAAAATCA AAATCCTTCC TAGAAAAAAA AAAAAAAATT TTTTTTCCAA 
    AAAAAAGGGA AAAAACAAAA AAGGGGGGAA ATTTTTCCCC CAGGGGGGGA 
    AAAAACCCTT TTTAAAAAAA AAAAAAAGCT TTTTCCGAAA AAAAAAAAAA 
    AAAAAATCCC CTTTTTTTTT AAAAGGGGAA AAAAACCAAA AATGGGGGGG 
    GCTTTTTTTC CCGGGGTTTT TTTGCCCCCC CCCTAAAAGG GGGTTTTAAA 
    AAAAAGTTGT CCCCCTTTTT TTCCCCACCC CCAATTTGGG GGGCCTTATT 
    TTCCCCCCCC CCCAAAAAAA AAAAAACCCA AGTTTTTTTT TTTCCCCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 900355 [Map]; Strand: c
      • AT4G02050.1 - [+] show detail - sugar transporter protein 7
        Distance: 0; Region: intron1 (5UTR)
      • AT4G02060.2 - [+] show detail - Minichromosome maintenance (MCM2/3/5) family protein
        Distance: -281; Region: promoter
      • AT4G02055.1 - [+] show detail - pre-tRNA
        Distance: -821; Region: promoter
    Flanking Genome Sequence: GT16660 - 3-prime edge 
    CCGTTACCGA CCGTTTTCAT CCCTTTTACA ACTATGGATT CGTGTTTGGT 
    ACATAATTGT TTGGAATTAA GTTCCAACAA GTAAATACGT CATTTTCTTG 
    ACCTTATCTT AACATAACAA ATTAAAAATT TAATACTGAT TTTGCATGTC 
    TTCCTCCTAC TTTGATGTCT ATTTCCACAA AAATCATCAA TGCTCGTTGG 
    AATATTGTCA GAATATACTA ATGCTATATA AGAAAACAAA TACAAAAAGA 
    GATTTTATAC TTTTTTGGTC AAATGTCATC TTCATAATAA AAAAAAAGAT 
    TACGATCATA TCCCGTTCTA ACAAGTAACA CCTCGAAAAA AAAAAAGATT 
    CAAATTCCTT CCTAGAAAAA AAAAAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 900248 [Map]; Strand: c
      • AT4G02050.1 - [+] show detail - sugar transporter protein 7
        Distance: 0; Region: intron1 (5UTR)
      • AT4G02060.2 - [+] show detail - Minichromosome maintenance (MCM2/3/5) family protein
        Distance: -388; Region: promoter
      • AT4G02055.1 - [+] show detail - pre-tRNA
        Distance: -928; Region: promoter
    Flanking Genome Sequence: GT16660 - 5-prime edge 
    TCTCAAAGTG GCAAAACTTC ACATTTAAAA TTTTCCCAAA ACCTAACCAA 
    ATTGAAATCT ATCTAACCAC GTGAAGATGT AAATGTGTAT AACCCTTTTT 
    GTTTCGTTGT CTCTCAGATT CTGGAATTTG AGTAAAAGCA AGAAAAAAGT 
    CAACCGTTGC AACAAACTCT TAAAAAGAAG CAAAGTAGTG GCAGAAGAAG 
    AAGAAGAAGA AAAGAAAATG GCAGGAGGGT CGTTTGGTCC GACCGGTGTG 
    GCTAAGGAGA GAGCAGAACA ATACCAAGGG AAAGTCACTA GTTATGTTAT 
    AATCGCTTGC CTTGTTGCAG CTATTGGTGG ATCCATCTTT GGATATGACA 
    TTGGAATCTC AGGTTCTTTT CTTCATCTTT TGAATCCAAT TTCTTAATAA 
    TCTTATCAAA CAATGGCTGA AATGGTTTTT TGTTTGTATG CAGGAGGAGT 
    TACATCGATG GATGAGTTTC TTGAGGAGTT TTTCCACACG GTTTATGAGA 
    AGAAGAAGCA AGCTCATGAA AGTAATTACT GCAAATATGA TAATCAAGGC 
    TTAGCTGCTT TCACTTCTTC ACTCTACTTA GCTGGTTTGG TTTCGACTCT 
    CGTGGCTTCA CCCATCACTA GGAACTACG

AT4G02050.1

Model type
Protein coding
Short Description
sugar transporter protein 7
Computational Description
sugar transporter protein 7 (STP7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26340.1); Has 26348 Blast hits to 25870 proteins in 1897 species: Archae - 376; Bacteria - 11847; Metazoa - 3711; Fungi - 6732; Plants - 2516; Viruses - 0; Other Eukaryotes - 1166 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02055.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-His (anticodon: GTG)
Link
InterPro Scan - TAIR

AT4G02060.2

Model type
Protein coding
Short Description
Minichromosome maintenance (MCM2/3/5) family protein
Curator Summary
Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.
Computational Description
PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1).
Link
InterPro Scan - TAIR