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GT16963

CSHL Arabidopsis genetrap mutant lines

Original: GT16963

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16963

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14026055 [Map]; Strand: w
      • AT4G28340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -400; Region: promoter
      • AT4G28350.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: -522; Region: promoter
    Flanking Genome Sequence: GT16963 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCT 
    GTAAGCATCA TAGTATTAAT AGGACCTAGT ATATATTAAT CCTAAAATCA 
    TCATGTCAAA TGCCTAACAG TAACTACTTT TTTGGTAGGT TCATTGTTCA 
    ATTCAAAAAC ATTGAAGTTG ATATTCTCTT ATTACTATGT GCAACAGTGC 
    AAGTATTACT AATCAATCAC TAATCACTTT GGTTTATGAA ACGGTGCGTT 
    TGGGAGATGT TGACAGTGTG CAACATTGCA AATATTGTTT TACTATTTAC 
    CATAACTTTA CCAAACCAGA CACCGAATGT TACCTCCCTT TTACACTAGG 
    TTAGAACTCT CATTCTTTAT GTCTCTCTCT CATTGTTACA CTCTCTGTTT 
    TTGTTATTGT TTAGAGAGAA ACACAAGAAA CGATTTTTTC TTTTTTTTCT 
    TTTAGTTGTC TACATTGTAC TAATGGATCA CAAGGATAAC TCTACAAGAC 
    ACAATACACA TACTTATAGT GGTATTTCAC CACAAGATAC ACATTCACAC 
    ACTTAACATT CTAGCTTTAA AACTACTCCC ACTTAGACAT GATTATTCCT 
    AAGGACTAGA CTAAAACCAC AAGTAACGTT AAACTACTAA ACCTTACACC 
    ACAACTCCTC TTAACAACTA CTCTTTAGCT ACTCTAGCTT AGCTTAATTA 
    TAAGCACACC ATATGCACAT AATCTGGGCT CAACTCTAAT AATAGCCCAT 
    TTACTAACCA AAACACACAA TTACTAATTT ACTATGTGGG CTTCACTCTA 
    GCCCATAGCC TCATCTTTGA C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14026113 [Map]; Strand: w
      • AT4G28340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -458; Region: promoter
      • AT4G28350.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: -464; Region: promoter
    Flanking Genome Sequence: GT16963 - 5-prime edge 
    CTTTCTCCCT GCTTACAGGT GACGAATAAT TTGAGTTATG TGCGATATGT 
    TTGAAAGAAT TAAAGAGGAG AATCAAGAAG AAGATGAATA TTTGACATTT 
    CAAAGCTGAC TTTTTTGACG AATAAGTTCA TCATTATTCA CACCTATAAA 
    TGTGGACAGC GAAATACCAA GTCCAACAAT TTCACGATTA ATTCCAAGTG 
    GCTTGGATCA AGAAATATAC AAAAACAAAA TTCCAAATGC TTAGGAAAAT 
    AAATAAACGA GAGATCAAAT TATCACGGCG GATATTATTT CGTCCACATT 
    TGTTGTTCAA ACAGATTTCT AACACATATA ATTAGCATAT ATACATTAAA 
    CAACATTATC TCCTTAATAA TTTTGACTCT GGAACAGATC TTTCCAGTTT 
    CAGACAATAT ATTTGAACAA TCGGTTCGTT GAATCGAGAA CAAACCAATC 
    AAATCTCTTT TGACAAAGCT CTTCTTCTTC TTCCCATAAA ACTTCACAAC 
    GGCACACGTC TACGAAAAAA CCTCTCTCAG TCACCATGTT CTCTAAAGTT 
    TCCATTCTCT CCCTTCGCAC TAGCATCCCT ACTCTTGTTC CGATCAACCA 
    CAGGCATCGA ATTCATCTAC AACTCCAATT TCACCACAAC CAACACACTT 
    CTCCTCGGCA ACGCCACTGT TAAATCTCCA CCGTCGATCC TCACCCTCAC 
    CAACCAAACC ACTTTCTCCA TCGGACGTGG CCTCTACCCT TCAAGAATCA 
    ACGCCTCCTC CTCCTCTGCC TCGCCGTTAC CTTTCG

AT4G28340.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28330.1); Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28350.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin protein kinase family protein
Computational Description
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem, cotyledon, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G04960.1); Has 117572 Blast hits to 116208 proteins in 4641 species: Archae - 127; Bacteria - 13536; Metazoa - 42743; Fungi - 9918; Plants - 33874; Viruses - 420; Other Eukaryotes - 16954 (source: NCBI BLink).
Link
InterPro Scan - TAIR