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GT17363

CSHL Arabidopsis genetrap mutant lines

Original: GT17363

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17363

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9514064 [Map]; Strand: c
      • AT2G22420.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G22425.1 - [+] show detail - Microsomal signal peptidase 12 kDa subunit (SPC12)
        Distance: -872; Region: promoter
      • AT2G22425.2 - [+] show detail - Microsomal signal peptidase 12 kDa subunit (SPC12)
        Distance: -875; Region: promoter
    Flanking Genome Sequence: GT17363 - 3-prime edge 
    ACGGTAGAGG TATTGTACCG ACCGTTACCG ACCGTTTTCA TCCCTATTTA 
    AGACACCCAC TCACGTGCTT AAGCATCATC TTCATCTCAC TCGACCATAA 
    CCAATCCGGT TCTGGTAAAC CGGATCCAGC TCTTGAACCG AGTTACCGTA 
    AGAAGCTTGA CAACCTTTGT CCTTTGGGTG GAGATGAGAA TGTGACTGGA 
    GATCTAGATG CAACACCTCA GGTTTTTGAT AATCAGTATT TCAAAGACTT 
    GGTTTCAGGG AGAGGGTTTC TTAACTCTGA TCAGACTTTG TACACGAATC 
    TAGTGACGAG AGAGTATGTG AAGATGTTTA GTGAGGATCA AGATGAGTTC 
    TTTAGGGCTT TTGCAGAAGG CATGGTGAAG TTGGGTGATT TGCAATCTGG 
    GAGACCTGGT GAGATTAGGT TTAATTGTAG AGTTGTTAAT AGAAGGCCTA 
    TTGATGTATT GCTTGTATCT TGAATTATCA TTAGTAAAGA GAAGAAATCT 
    TAATTATGAC TTCTAAATAG ATGCAAATCT TTTTAGCTTG GTTCTCCAAA 
    ATTGATTTTG ATTTATGAAT ACTGGTCACT GCTAAAGCTA CAATCTGGTC 
    ACACCAGTCT ATAAAATAGT AAACATTATC TAATCAGTGA AGTTGTTGTC 
    CCAATAAACA AATTCTGGAC TGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9513999 [Map]; Strand: c
      • AT2G22420.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G22425.1 - [+] show detail - Microsomal signal peptidase 12 kDa subunit (SPC12)
        Distance: -937; Region: promoter
      • AT2G22425.2 - [+] show detail - Microsomal signal peptidase 12 kDa subunit (SPC12)
        Distance: -940; Region: promoter
    Flanking Genome Sequence: GT17363 - 5-prime edge 
    TACTTTCTCT GTGACCTGAT AAGCAACCAT GTCTTTTACA GAAAGATTGA 
    ATCTTTCGAA GAGATCAATC AAGAAAGTTG CGTTGGCTCT TGGACTTGGC 
    ATTATATCGT CGGAATCTTG CTGACTCGCT GTTAAACTGT CTTTCCTCCT 
    TAGCTTCACT TCCCAATCTG GTCCTCCTGT CTGGTTTTTT CAAAGACCAA 
    AGTTACAAAA CCGAAATTTC ACTAAACCGG GTAAATTGAA TTTTGACTTA 
    CAAGAGCAAC GGCGTCACGA GCGGCCATGA TAACGATATC GGCACAAGAA 
    ACAGTAGCTG GACAAGCTTT CTCTAGAGCT TCTTTAATGT CGTCAACGAC 
    TTCCAAAGAT CTTACTGAAT CGATGTTGGA AAGTGAT

AT2G22420.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G19890.1); Has 4727 Blast hits to 4701 proteins in 310 species: Archae - 0; Bacteria - 4; Metazoa - 10; Fungi - 328; Plants - 4313; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22425.1

Model type
Protein coding
Short Description
Microsomal signal peptidase 12 kDa subunit (SPC12)
Computational Description
Microsomal signal peptidase 12 kDa subunit (SPC12); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endomembrane system, signal peptidase complex, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 12kDa subunit (InterPro:IPR009542); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 12 kDa subunit (SPC12) (TAIR:AT4G40042.1); Has 315 Blast hits to 315 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 81; Plants - 67; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22425.2

Model type
Protein coding
Short Description
Microsomal signal peptidase 12 kDa subunit (SPC12)
Computational Description
Microsomal signal peptidase 12 kDa subunit (SPC12); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endomembrane system, integral to membrane, signal peptidase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 12kDa subunit (InterPro:IPR009542); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 12 kDa subunit (SPC12) (TAIR:AT4G40042.1); Has 315 Blast hits to 315 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 81; Plants - 67; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR