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GT17364

CSHL Arabidopsis genetrap mutant lines

Original: GT17364

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17364

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12967183 [Map]; Strand: w
      • AT1G35330.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 1070; Region: intergenic
      • AT1G35333.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -3088; Region: intergenic
    Flanking Genome Sequence: GT17364 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTCTT 
    AGTGTAGTCA TCCATTTTCT TAAGATCACC TTACTAAACC AGCTAAACAA 
    TAAGTCCTTC ATGTCACTCG ACTAAATAGA TCAAGACGGA ATAGGATTGA 
    TGAAAAGTTA CGAAATCTCG AAATTACTTT ATAATTTCTC TATTATATGG 
    GTTATCGATC TAACTTTTGA ACTTTAGCTT TTTAGTATCA CTTGAACATC 
    AGCATGTTAT TTAGGTTGAT AGGAGTAGGA CATTTCCGAA GAGTTCCTTC 
    AAGACGTGGA TTTTTATATC ATTAGTAATT TACCATTGTT GGTGCATTGA 
    TTAGCACTTC CAACAATAGT GACTTAAACC GGAAGAATCA CGACTTAAAC 
    CGGAAGAATC TTGAATTAAG CTGATAATTA AGTCAAACCG TGTATCCCGG 
    TTTAGCCTGT TAATGGGCCG AAATAAGGAG GTCGCCAGCC AACTTCGGCC 
    GGAAAAAGGA GAGGTCGCCA GACAACCTCG ACCCAAAGTA GGAAGATCGC 
    CCAACCGACT TCCCGATTTG AAGAAAAAGA AGTTTTCCTT TCCGATAAAG 
    GAGAATCGCG AAAATAATGA AAAATAGAAG ATTCAAGCTC CGAATAATTA 
    GAAGTTTAAC TTATCTTTAA ACCCTCTTAA TAATGTATAA ATAGAGGGGT 
    TTGTCCTCTA TTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9513912 [Map]; Strand: c
      • AT2G22420.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT17364 - 5-prime edge 
    TCTTGGACTT GGCATTATAT CGTCGGAATC TTGCTGACTC GCTGTTAAAC 
    TGTCTTTCCT CCCTAGCTTC CCTTCCCAAT CTGGGCCTCC TGTCTGGTTT 
    TTTCAAAGAC CAAAGTTCCA AAACCGAAAT TTCACTAAAC CGGGTAAATT 
    GAATTTTGAC TTACAAGAGC AACGGCGTCA CGAGCGGCCA TGATAACGAT 
    ATCGGCACAA GAAACAGTAT CTGGACAAGC TTTCTCTAGA GCTTCTTTAA 
    TGTCGTCAAC TACTTCCAAA GATCTTAGTG AATCGATGTT GGAAAGTGAT 
    AGTTTTTCAC CCAGCATGTT TGGTGTGTCG TCAAGCAACA AAAATGCGTC 
    ACATCCCTGA ATTTTATGAT TCCAAGAAA

AT1G35330.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G09120.1); Has 10408 Blast hits to 10377 proteins in 292 species: Archae - 0; Bacteria - 6; Metazoa - 2682; Fungi - 924; Plants - 5266; Viruses - 48; Other Eukaryotes - 1482 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G35333.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22420.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G19890.1); Has 4727 Blast hits to 4701 proteins in 310 species: Archae - 0; Bacteria - 4; Metazoa - 10; Fungi - 328; Plants - 4313; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Link
InterPro Scan - TAIR