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GT17973

CSHL Arabidopsis genetrap mutant lines

Original: GT17973

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17973

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3876315 [Map]; Strand: w
      • AT3G12145.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -78; Region: promoter
    Flanking Genome Sequence: GT17973 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCG TAAAACATTT 
    GTATACCTAA CTATTTGGTG CAGTGTGCCA GTGACTATCA TACGGTCAAA 
    TTATTGAATA GTAGAGATAT ATGTACCATG CTTGTGAATT AAATTTATGT 
    TGTGAAAAGA ATATTGTACG TTGGGAGTAG TGTAGAACCC TAACTGTACA 
    AAATCAGTAA CATTACACAG CTGTGTTCCA TTGAAGTCTC TGCTTATATA 
    CAAGAACTTG CTCATTCCTC AAAGCATCCA CACATAATCA CGATGAAGCT 
    CTTTGTTCAT CTCTCTAGAC TATTCTCCAT CCTCTTCATC TCACTCGACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16497524 [Map]; Strand: c
      • AT2G39518.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: -529; Region: promoter
      • AT2G39520.1 - [+] show detail - unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bac...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17973 - 5-prime edge 
    CCTACTTTCT CCCTGCCTTT GGATACGTTG ACCAAACCTT CCGTGTGCAA 
    TTTCTCAATT CGTCAACTAA ATGAAAGTAT TGAGAAATTG TAATCATCGT 
    AAACGAGTAG CGAATGTGAA CGTTGATCGC TAAATTGGAC GCCGTTATAT 
    AAGGCCTTAG TCGGATAGTC AAACTCTCTA CATTTTATTT CCTAAATAGA 
    ACTGTTTTCA ATATTGATAT TGCAGATAGA AAAATGATAA ACGGCTTTGA 
    AGTTTCGCCG GTAGATAACT AACTATATCT TCACAAGCTT CTTTATAATA 
    GCCTTTACCT TAATTTTAAT TTGCACTTAA TTTAAGCTTG GTGTGTTTTT 
    TAAGTTTGAG ATTTAAAATA TTATAGGAAA AAAATATGTA TCCCATTGAT 
    TTGGTAAGCT AGACGTGGTG ATCCAGTTTG AGCACGACTT CAACAATAAA 
    CTTTGGTATA TTTCATAAGT ATCTTTATTT TGTTTGTTTG ACATTTACCG 
    TCATTACTTG GTCCCATGCC ATAGAGCAAA AGTCAACTCT TATCCCTCTG 
    GCAGCAAGTT TTGGTTATAA ATTAATCTCA GACT

AT2G39518.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G39530.1); Has 160 Blast hits to 160 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39520.1

Model type
Protein coding
Computational Description
unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12145.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Curator Summary
A novel leucine-rich repeat protein. Interacts directly with MADS domain transcription factor.
Computational Description
FLOR1 (FLR1); FUNCTIONS IN: enzyme inhibitor activity, transcription factor binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 1 (TAIR:AT5G06860.1); Has 42601 Blast hits to 16185 proteins in 663 species: Archae - 31; Bacteria - 1045; Metazoa - 3045; Fungi - 233; Plants - 35461; Viruses - 0; Other Eukaryotes - 2786 (source: NCBI BLink).
Link
InterPro Scan - TAIR