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GT18077

CSHL Arabidopsis genetrap mutant lines

Original: GT18077

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18077

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21540336 [Map]; Strand: w
      • AT5G53130.1 - [+] show detail - cyclic nucleotide gated channel 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT18077 - 5-prime edge 
    CTTCTGTAAA ACTTGTCGGA TATTGAGCTT ATTGTTCTCT GGAATATTCC 
    AGTTTGAATC TCGTTTTTAC CGGAATATTC CACGTCGGAG GAAGTCTTGT 
    CCGACTTCCA ATCTTGAAAC CTGATCAAAG AAAGTGAAGA ACAATTGAAT 
    TTAAGCTTAC AGACCTAGAA TTCAATTAGA CAAATCTGGA ACACTGACCT 
    TACAAACTTC TCTTGTCGGA AATTCATAGT TTGAGACTAA TAAGATTCAA 
    TACAAACAGA GATTTCACTG CTTC

AT5G53130.1

Model type
Protein coding
Short Description
cyclic nucleotide gated channel 1
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide gated channel 1 (CNGC1); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding, intracellular cyclic nucleotide activated cation channel activity, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, calcium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR