1. Home
  2. Mutant Lines
  3. GT18190

GT18190

CSHL Arabidopsis genetrap mutant lines

Original: GT18190

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18190

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17439382 [Map]; Strand: w
      • AT4G36988.1 - [+] show detail - conserved peptide upstream open reading frame 49
        Distance: -795; Region: promoter
      • AT4G36990.1 - [+] show detail - heat shock factor 4
        Distance: -795; Region: promoter
    Flanking Genome Sequence: GT18190 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGGCATG GTTGAAGAAA 
    AAGGTCTTAG AGAGACGAGT ATTCATAGTT TACACAAATT CAAGTCTCCA 
    TTGGAGAAAG ACGATATCAA CGTGTGAAAA TGTCGATAGT TGCATGCACA 
    TCTCCATATA TATGGACCTC ATCATACAAA TCGTCTATTT TTAAACGCTA 
    TATAATCGAG TCAGTATACT TATTTTGCAA GTTATAGTAG AATTTATAGC 
    TAATTATATA TATATATATA TAAATGATTC AGTATTTTGT GAACCAAATA 
    CTCCTTTGGC ATTGATAAAT GATAAATATT TGCGACCTTT TTC

AT4G36988.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 49
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF49 represents a conserved upstream opening reading frame relative to major ORF AT4G36990.1
Computational Description
conserved peptide upstream open reading frame 49 (CPuORF49); LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G36990.1

Model type
Protein coding
Short Description
heat shock factor 4
Curator Summary
encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins.
Computational Description
heat shock factor 4 (HSF4); FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cyclopentenone, response to heat; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor B2A (TAIR:AT5G62020.1); Has 2101 Blast hits to 2087 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 340; Fungi - 475; Plants - 774; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink).
Link
InterPro Scan - TAIR