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GT18209

CSHL Arabidopsis genetrap mutant lines

Original: GT18209

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18209

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19499121 [Map]; Strand: w
      • AT1G52350.1 - [+] show detail - pre-tRNA
        Distance: -629; Region: promoter
      • AT1G52360.1 - [+] show detail - Coatomer, beta' subunit
        Distance: -41; Region: promoter
      • AT1G52360.2 - [+] show detail - Coatomer, beta' subunit
        Distance: -222; Region: promoter
    Flanking Genome Sequence: GT18209 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACGA 
    CTTGAGTGAG ACATTTACGA AATTGCCACT AGAGTTTGGG CCTCTCAAAG 
    CCTTATTTAT TAATCAATTA AATCGATGAC CCAAGCGATT GAAAAGAGTC 
    CATTAATAAA ACGCCTACCA ACACCTAAAC TAGAATTACA CATCAATCAT 
    CATTCCATCA CTTGAAAAAT ACTCTTTGGG GAGTGTAATG GAGGTGAAAA 
    AAAAAAAGGG GGGGGAATGG AAAAATTTTC CCCAGGCCCC AAATTATAGG 
    GCCAAGGGCC CTGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19499195 [Map]; Strand: w
      • AT1G52350.1 - [+] show detail - pre-tRNA
        Distance: -703; Region: promoter
      • AT1G52360.1 - [+] show detail - Coatomer, beta' subunit
        Distance: 0; Region: exon1 (5UTR)
      • AT1G52360.2 - [+] show detail - Coatomer, beta' subunit
        Distance: -148; Region: promoter
    Flanking Genome Sequence: GT18209 - 5-prime edge 
    TCGTTCTTAA GCAAATTTCC CATTTTCTGA TTTTTAAGTT TTTTTCTCAT 
    CACACCGAGC TAAACGTCGT TGGTTCTTCG ATCTCCGATT TGCAGATTTA 
    AGCGATAATA CGAGATCCCA AGGGGCTCAC AAGCCTTTCT ACGCTTAATC 
    TGTAACTATG GTGAGTTCTG GAACCTTTCC TCCACTTTTG TGTTTTCATA 
    TCACTCGA

AT1G52350.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: TCG)
Link
InterPro Scan - TAIR

AT1G52360.1

Model type
Protein coding
Short Description
Coatomer, beta' subunit
Computational Description
Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3); Has 77726 Blast hits to 33438 proteins in 848 species: Archae - 64; Bacteria - 8410; Metazoa - 31451; Fungi - 17403; Plants - 9943; Viruses - 42; Other Eukaryotes - 10413 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G52360.2

Model type
Protein coding
Short Description
Coatomer, beta' subunit
Computational Description
Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3).
Link
InterPro Scan - TAIR