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GT18292

CSHL Arabidopsis genetrap mutant lines

Original: GT18292

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18292

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 172679 [Map]; Strand: w
      • AT5G01410.1 - [+] show detail - Aldolase-type TIM barrel family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18292 - 3-prime edge 
    AACGGTAGAG GCATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATAC 
    ACACTTCTAC CCGACCGGAT GCGATCTGGT GATATTCATA TCACTCGACG 
    ATGGGATCAA TCTCAACGAT GAGAAGGTTG AGAGGTTCGC TAATCGCTCC 
    GAGTGATCAA AGAAATAAAA GGTAAAATTT CTCAGACGAA ATGGTTTCAG 
    AATTTTCTCA GACCATTTTG CAGTAATCTC TTTGAAAAGA AGAAGATGAT 
    GATATTGTTG GTAGTTTGTA TCCTTTGTGT TTTCCTTATA ATCTTTGATA 
    GTCTTTTGTT ATTGTAATCT CGTAATCCCT TTGCAAGAAC AAGTTTGTCA 
    GTTATAATAA TGTACTACTC TCTTGATCGA TCAGTTGGTT TTGAATCTGA 
    TATATTCTTC GATCCATTGG TATTGACCAT TGAGCTTGTT GTTCAATTAC 
    ATTTCAGACA GGCCTATTAG TACTTAGTAG TATCAGGTTG ATAAACAAAG 
    GATGAACTTG TTTAATTTGG TAATTCGTAC ACTGGTACTG AGCTCTGTAG 
    ATGTTTGAGA CTTTGAGTAT TGGATTTGGT TTTGAAGACT GTCCTGGATT 
    AGATCACATA GCCTCTAGTT CTTATTTTAA TTTGTGATTT CAGGCATAGC 
    TGTCAACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 172795 [Map]; Strand: w
      • AT5G01410.1 - [+] show detail - Aldolase-type TIM barrel family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18292 - 5-prime edge 
    GCTGGGACAC CGTTCTTGAC CATACCAGAA CCAACAAAGA CACCATCACA 
    TCCAAGCTGC ATCATGAGAG CTGCATCAGC CGGAGTAGCC ACTCCACCGG 
    CGGCGAATTG GACTACAGGA AGACGACCAA GCTGCTTAGT CTGCATCACG 
    AGATCGTACG GAGCGGCTAA TTTCTTAGCG AAAGTGAAAA CCTCATCATC 
    ATCCATGTTT CGCAAAACCC TAATGTCACC ATTAACAGAC CTCACATGCC 
    TCACAGCTTC AATAATGTTA CCGGTTCCAG CTTCACCTTT GGTCCTAATC 
    ATCGCCGCAC CTTCACGGAT CCTCCTCAGA GCCTCGCCGA GATTCCGGCA 
    ACCGCAAACG AACGGGATCC GGAAATTATG CTTGTTGATG TGATGATCTT 
    CATCAGCAAG AGTCAAAACC TCGCTCTCAT CGATGTAATC GATTCCAATT 
    GCTTCAAGGA TCTGAGCTTC AACGAAATGA CCAATCCTAG CCTTAGCCAT 
    CACCGGAATC GTAACGGCTT GTTTGATTTC TTTAATCATT TGTGGATCGC 
    TCATACGAGC GACGCCTCCT TGAGCGCGGA TATCAGCAGG AACACGCTCC 
    AAAGCCATGA CGGCGCAAGC ACCAGCCTCC TCGGCGATAC GAGCTTGCTC 
    GGCGTTGACG ACATCCATGA TAA

AT5G01410.1

Model type
Protein coding
Short Description
Aldolase-type TIM barrel family protein
Curator Summary
Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.
Computational Description
REDUCED SUGAR RESPONSE 4 (RSR4); FUNCTIONS IN: protein homodimerization activity, protein heterodimerization activity; INVOLVED IN: in 12 processes; LOCATED IN: cytosol, endomembrane system, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: pyridoxine biosynthesis 1.1 (TAIR:AT2G38230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR