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GT18560

CSHL Arabidopsis genetrap mutant lines

Original: GT18560

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18560

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7294336 [Map]; Strand: c
      • AT3G20830.1 - [+] show detail - AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
        Distance: -8076; Region: intergenic
      • AT3G20840.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -6339; Region: intergenic
    Flanking Genome Sequence: GT18560 - 5-prime edge 
    CTTTCTCCCT GCGTGTATTG GTTACTTAAT AGAAATGGCT TTCTTAAAGA 
    ATATAATCTT ATCTTATTCA TTTTTTAAAT ATCCGTTTTA AGTTCATATG 
    ATTATAGCAA CTACTACGTA AGGAAAAGAA AAGCAAAATT TCTCATGTTC 
    ATGGGTTGTG AGGAACTGAG ATAGTGTTTG GCATGAATTC GTTCATTGTA 
    ACCATCCCGT AGTTGAATAA AAACTGAAAT CAAGATTTTA ATTTGATATT 
    CAAACTTTTG ATCTTGTGTC TAACTATGTA TAGCAATTTT TATAATGTTT 
    TTTTTTTTTA ACCCCCCCCA AAAAACCCCC CATTTTTGGG GTTTTGAAAC 
    CCGTTAAGGG GCCCCCTTCC TTTTTAGAAG GAAATTTTGG GGGGTTAAAT 
    AACCGGGGAA AAAAAAAGGG GTTTGGCCAA ATTTTTTTGG TTAAAATTCC 
    CAACCAATTT AAAAACCGGC CCTTGGAAAC CGAAACCCTT AAAAACCTGG 
    TAACCGGGTT TTTTTTACCC CGGGAATCCA ACTTATTTGT GAAGGCGGGT 
    AAAAATAAGC AAAAGTTTTT AAAAACCCCT GGATTAAGGG GCCCAAAAAA 
    TTGCCCCCAT TAAGGGAAAA AATTTTTTTT TGAAACCAAA ACCCTTTTTA 
    TTTTCCCTTC CCA

AT3G20830.1

Model type
Protein coding
Short Description
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Computational Description
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: hypocotyl, male gametophyte, root, pedicel, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G51170.1); Has 85073 Blast hits to 71957 proteins in 2517 species: Archae - 46; Bacteria - 10831; Metazoa - 34711; Fungi - 11201; Plants - 11819; Viruses - 155; Other Eukaryotes - 16310 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20840.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.
Computational Description
PLETHORA 1 (PLT1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G51190.1); Has 7378 Blast hits to 5365 proteins in 273 species: Archae - 0; Bacteria - 8; Metazoa - 48; Fungi - 6; Plants - 7088; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink).
Link
InterPro Scan - TAIR