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GT18860

CSHL Arabidopsis genetrap mutant lines

Original: GT18860

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18860

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21984097 [Map]; Strand: c
      • AT5G54160.1 - [+] show detail - O-methyltransferase 1
        Distance: 0; Region: exon4 (CDS)
      • AT5G54165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -472; Region: promoter
    Flanking Genome Sequence: GT18860 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACATTAG CCAAAGCATC 
    AGGCTTCAAG GGCATCAAAG TTGTCTGCGA CGCTTTTGGT GTTAACCTTA 
    TTGAGTTACT CAAGAAGCTC TAAAAACAAA CAATGTTCCT ATGAAGATGA 
    TTTATATGTA AACATTATCT CATATCTCCT TCCACGGTTC CAAAACTATG 
    CTGTTTAATA ATGGTTTTTA CAAGAATTTG ATTATGAGTT TGTATTTTTG 
    TTTGTTTGGA ACAAAATTAT GTGATTATAG GGAAAAATAA AATGAGCTAT 
    TATTGAAGAA ATCACAGTGA AAAAAAAAAA AATTTCCCAA TTCCAATCAA 
    TCCCTTCCAA ATAGTTCCCA CGGGAACTC

AT5G54160.1

Model type
Protein coding
Short Description
O-methyltransferase 1
Curator Summary
A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3
Computational Description
O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54165.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR