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GT19168

CSHL Arabidopsis genetrap mutant lines

Original: GT19168

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19168

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19168 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGCACAG GACTACCAAC 
    ATAGAACAAA AAAAAAAACT TTTTTTTAAG GTTATGGTGG TTGGCCCTTC 
    CCGAACCTGA CCCAAAATAG TGGCCTCTAC TATCAATCGG GGCCAAATGG 
    TAAAAAATTG ATGAGTAAAG GGAAAGTTTT CGGGGGGGTT CAAAAAAAAA 
    AAAAAAATAT ATGTTTTTTA AAAAAAAAAA ATTCTAATTC CGGGTTTTAA 
    AAAAAAATTC AAAGGTTTCC TGAAATTTTA ATCCCCTTTT TAAAAAAATG 
    GGGGGTTTTT TTTTTCCAAT TTTTAGAAAC CCCCCCGGGG TTTTTCCCCC 
    CGGGAAAAAT TTTTTAAAAA TTGGGGGGGG GTTTTTTCCC CCCGGGGTAA 
    AAAATTTTGG GAAAAAACCC CCCCAAATTT TTTCAAAGGG GGGAAGGGAA 
    AAACTCTTTT TAAAGGGGAA AAAATGCCTT TTGCGCGGGT TTTTCTGGGG 
    GGGAAATTAA AAAAAAGGGG GGGCCCTGGG GGTTAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17761377 [Map]; Strand: c
      • AT3G48100.1 - [+] show detail - response regulator 5
        Distance: -503; Region: promoter
    Flanking Genome Sequence: GT19168 - 5-prime edge 
    CTTTATCCCT GCATACGGAT CTTGAATTTA TCTGATTGCG CAACTAGAGA 
    TATCAACATT GAAATTCATT CGCCCAAATA GTCAATCTGG CGGTCACATG 
    TCAGCTAACT TTTCCAACAA TGTTCATTAA TTAATTAACA ATCTCAAAGA 
    TTTGTAGATT GAAATACAAA TCTTCTCTCT GTGGTACATT TCTTGAAAAA 
    TGGGAAAATC AAGAAAGTAT CGAAAATGTA CAAAAATAAA AAGAAATGAA 
    TCAAAGTAGC CATGATCTTG ACAACAATAA TCGAGAGAGA TCGTCATGAT 
    ACGATTTCCC TCATCCAAAA TTGATTTTAT TTCCCTTCCC AAATCAAACA 
    TATCATATGA TTTCACCACT CACCATTACT TGACTATTCT CAACAAAAAA 
    AATATTAAAA AACTTTATGA CTTTGATTTT ATTTTTATTT GAAGTTTAGC 
    CAAAATTTGA AAATATGACT TTTGAGAAGA AAACAGAATA AACAAATAAT 
    TGGCCCCGCG CTATCAGACA GACAAAATCC CACAGATATG CAAAGATCTC 
    TCAGAATCCT CTCCCCATAT CATATTTTTC TCTTTTCCCT CTCCTTCTTT 
    CTTCCTTTAT AAATCCATTT ATTCTCCTCT CATCTCTCAG CAAAATCAAA 
    TCCTCATAGT TGATTCTCTC TATCTCTCTC ACGAGTCACG ATCCTACTCT 
    TCTTG

AT3G48100.1

Model type
Protein coding
Short Description
response regulator 5
Curator Summary
Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.
Computational Description
response regulator 5 (RR5); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 6 (TAIR:AT5G62920.1); Has 45766 Blast hits to 45301 proteins in 2636 species: Archae - 240; Bacteria - 40380; Metazoa - 18; Fungi - 471; Plants - 1420; Viruses - 2; Other Eukaryotes - 3235 (source: NCBI BLink).
Link
InterPro Scan - TAIR