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GT19547

CSHL Arabidopsis genetrap mutant lines

Original: GT19547

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19547

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16316942 [Map]; Strand: w
      • AT4G34060.1 - [+] show detail - demeter-like protein 3
        Distance: 0; Region: intron9 (CDS)
      • AT4G34060.2 - [+] show detail - demeter-like protein 3
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: GT19547 - 5-prime edge 
    ACTTAAACAT CATGCGTTTC CGGTATGACC ATATTATTAT GATTTTTCAT 
    TTAACATATA TTATTAATTT TTACTGATAA AACCCATGTG TTAATGTGTA 
    GGTTGACACA AATGTTGGTC GTATAGCACT TCGACTAGGT CTGGTTCCTC 
    TTGAACCTTT ACCAAATGGA GTTCAAATGC ATCAACTATT CGAGTTATGT 
    TTTCTCATTA ATTTGATTAA GAAAATACAT TACAAGTTAC TAACAACTAT 
    CTCCTATCGA TAAACATGAA CTCGTTTCAG GTACCCTTCA ATGGATCCGA 
    TTCAAAAGTA CCTTTGGCCA CGATTGTGTA AACTTCCCCA AGAAACTTTG 
    TAAGTTCAAA TGTTTTTCCT CAATTTAAGA AGCCAACTAT TTTTACGCCA 
    TTTGAACACA TATTACCTAA TTTTATTTCT AAATATTTTT ACAGATATGA 
    ACTACATTAT CAAATGATAA CATTTGGAAA GGTGTGCGTT ACTTTTTTCT 
    TTTTTATATT AATGAATAAA ATAATATTGT TGGTTTAATC AAATTTTGTC 
    AACTTTAGGT TTTCTGCACA AAAACTATTC CTAATTGTAA TGCATGTCCA 
    ATGAAGTCAG AATGCAAATA TTTTGCAAGT GCATATGTCA GGTACAATCT 
    TTTTTCTCTT TTCTACTTTG ATACTTAAAT ATAACTTAAT TTG

AT4G34060.1

Model type
Protein coding
Short Description
demeter-like protein 3
Curator Summary
Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.
Computational Description
demeter-like protein 3 (DML3); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3859 Blast hits to 3748 proteins in 1288 species: Archae - 200; Bacteria - 2252; Metazoa - 138; Fungi - 63; Plants - 258; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34060.2

Model type
Protein coding
Short Description
demeter-like protein 3
Curator Summary
Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.
Computational Description
demeter-like protein 3 (DML3); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT5G04560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR