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GT19678

CSHL Arabidopsis genetrap mutant lines

Original: GT19678

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19678

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14868728 [Map]; Strand: w
      • AT2G35320.1 - [+] show detail - EYES ABSENT homolog
        Distance: 0; Region: intron1 (5UTR)
      • AT2G35330.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -261; Region: promoter
      • AT2G35330.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -264; Region: promoter
    Flanking Genome Sequence: GT19678 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATC 
    TGTTATCAAT CCTCGTTTGA TCTGAAAGTT CTCATTTTTG TTAAATTAAA 
    TTCACCTAGA ATCGTTAATC GTAATTTCGT AGGTTTTGTT TAGTGAAATT 
    AGTCATGGGT TTGCTGAAAA GTTTGCTCTT TTTGGGAGTT TTATCGCTTT 
    TGTTTCCGCC ATGAAACTCA ATTCAATCCA CATGCTCCTG ATTGTTTCAT 
    CATTGAATTA GTAGCCAATG TAGATGCCGT GAATGAGTTC TCATCGATTC 
    TCAATTTTGT TGCTCCTACT GAATCCTTTT GTCGATTGAT GTAAGATGTG 
    ATCTCTGGTT TTAACTTGTT ATATTCAGGG AAGAGGGCAG ATTATGAATA 
    ATGATACATC AAAAAAGCTG GGAACTTTGG TTTCTGATGA TGGACCAGTG 
    AATGTATATG TATGGGACAT GGACGAGACT CTTATCTTAC TTAGATCTCT 
    GTTAAATGGA ACTTATGCTG AGTCTTTTAA TGGCTCCAAA GATGTTAAAA 
    GAGGTGTAGA GATTGGGAGG ATGTGGGAGA AACACATACT TAAGATCTGT 
    GACGATTTTT CTCCTTAACG AGCAAGAAAG TCTTCTCTTA ACGATAAGTT 
    CAGAACGGGA ATGATGAGAT GCCCTCGTAA ACTCTGTCAC CTACAAAGCA 
    TTAGTCTTGT GTTCTTGGCA AGTTGAGGAA TGCAATGAGC CATTTCTTGA 
    TTCATTGAGA CAGTATGATG ATGGAAAGGA TCTTTCTCGG TATGAGTTCA 
    AACAGACGAC TTTAGTACTC CTACTGATGA CTTGAACAAG AGGAAACTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14868781 [Map]; Strand: w
      • AT2G35320.1 - [+] show detail - EYES ABSENT homolog
        Distance: 0; Region: exon1 (5UTR)
      • AT2G35330.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -208; Region: promoter
      • AT2G35330.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -211; Region: promoter
    Flanking Genome Sequence: GT19678 - 5-prime edge 
    TTTCCTCCTA CTGTTATTAA CGATAACACA AAGTTCAAAA CCTAAAAAAC 
    AATACCTGCG CTGCCGATTC CGATAGGAGG ATGACCAAAG ATAGAGAGCT 
    CCGGAGCTAA GTGACGACGA TGCGTGTGTT TCAAAGATCA CAGACGAAAG 
    TAAACAGCGA GCCACGCGGC GTCGTTTAGT ATAATTTAGC TCTCGGCCCA 
    ATTAAAGGCC CATTATGTTC AACAGTCACA CACACCACCA GAAACTGAAG 
    AAAGCTTGTT TTTTTTCTCT TGCATGACCC TTCGCTTCTC TTCTCCTCTC 
    TTCTCTACCG AAGTTTGATT CAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14868804 [Map]; Strand: w
      • AT2G35320.1 - [+] show detail - EYES ABSENT homolog
        Distance: 0; Region: exon1 (5UTR)
      • AT2G35330.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -185; Region: promoter
      • AT2G35330.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -188; Region: promoter
    Flanking Genome Sequence: GT19678 - 5-prime edge 
    TAACACAAAG TTCAAAACCT AAAAAACAAT ACCTGGCGCT GCCGATTCCG 
    ATAGGAGGAT GACCAAAGAT AGAGAGCTCC GGAGCTAAGT GACGACGATG 
    CGTGTGTTTC AAAGATCACA GACGAAAGTA AACAGCGAGC CACGCGGCGT 
    CGTTTAGTAT AATTTAGCTC TCGGCCCAAT TAAAGGCCCA TTATGTTCAA 
    CAGTCACACA CACCACCAGA AACTGAAGAA AGCTTGTTTT TTTTCTCTTG 
    CATGACCCTT CGCTTCTCTT CTCCTCTCTT CTCTACCGAA GTTTGATTCT 
    TCTCTCTCGA

AT2G35320.1

Model type
Protein coding
Short Description
EYES ABSENT homolog
Curator Summary
homologue of the animal Eyes Absent genes. encodes a tyrosine-specific phosphatase. the protein sequence lacks the cys-containing signature of the classical tyrosine phosphatases. belongs to the aspartate-based phosphatases. The enzyme activity is strictly metal-dependent.
Computational Description
EYES ABSENT homolog (EYA); CONTAINS InterPro DOMAIN/s: EYA (InterPro:IPR006545); Has 432 Blast hits to 431 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35330.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G32530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35330.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G32530.1).
Link
InterPro Scan - TAIR