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Mutant Lines
GT19679

GT19679

CSHL Arabidopsis genetrap mutant lines

Original: GT19679

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19679

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 1252234 [Map]; Strand: w
- AT4G02800.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 553; Region: intergenic
- AT4G02810.1 - [+] show detail - Protein of unknown function (DUF3049)
  Distance: -3928; Region: intergenic

AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TAGCTGAAAG TTGTGAATTC AATTAGAAAA ACTAACAACG TACGTTTACA 
CTATTAATCT AATGGTAAGC ACTATGTAGA CTTTATTCTG CAAACACTGG 
ATAAGGAAGA ACATAATTTT CACAAAAAAG AATGTTGTTA TTTTTGACAA 
AACTTCTTGA ACTACTAATT TCCTTTTTGA TCCGTGGCTG TTCTTGAAAC 
ATACATGTAA AAACAGCAGA CTTTTGTCTG GCCCTTCCAG GTCTAAAACA 
GGCCGAGTCT AATCAGCCCT GATTCTAACA AATTTTAAAA GGCCATATCG 
GATTAGTAAA CACAAGAACC TTCACTAAAA CTCACTAAAA CAAGCATAGA 
AGGCAATTAT TACAGACAGT AGTCATTAAC CAGCATTAGA CCCAATTTGC 
AAGATCAAAA GCATAGTACA TATATTGAAT TTGCTTATCT TACGTACTGT 
GACCAAAACT ATTACAACAA ACAGAGGTAT GT

5 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT19679 - 5-prime edge
```
TTGGCCCAAA AAAAAGGACT ACC
```
5 prime edge [+] show sequence
1. Chromosome: 2; Position: 14868812 [Map]; Strand: w
  - AT2G35320.1 - [+] show detail - EYES ABSENT homolog
    Distance: 0; Region: exon1 (5UTR)
  - AT2G35330.1 - [+] show detail - RING/U-box superfamily protein
    Distance: -177; Region: promoter
  - AT2G35330.2 - [+] show detail - RING/U-box superfamily protein
    Distance: -180; Region: promoter
Flanking Genome Sequence: GT19679 - 5-prime edge
```
AGTTCAAAAC CTAAAAAACA ATACCTGCGC TGCCGATTCC GATAGGAGGA 
TGACCAAAGA TAGAGAGCTC CGGAGCTAAG TGACGACGAT GCGTGTGTTT 
CAAAGATCAC AGACGAAAGT AAACAGCGAG CCACGCGGCG TCGTTTAGTA 
TAATTTAGCT CTCGGCCCAA TTAAAGGCCC ATTATGTTCA ACAGTCACAC 
ACACCACCAG AAACTGAAGA AAGCTTGTTT TTTTTCTCTT GCATGACCCT 
TCGCTTCTCT TCTCCTCTCT TCTCTACCGA AGTTTGATTC ATCTCACTCG 
A
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 1252334 [Map]; Strand: w
- AT4G02800.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 653; Region: intergenic
- AT4G02810.1 - [+] show detail - Protein of unknown function (DUF3049)
  Distance: -3828; Region: intergenic

CGCTGCCGAT TCCGATAGGA GGATGACCAA AGATAGAGAG CTCCGGAGCT 
AAGTGACGAC GATGCGTGTG TTTCATAGAT CACAGACGAA AGTAAACAGC 
GAGCCACGCG GCGTCGTTTA GTATAATTTA GCTCTCGGCC CAATTAAAGG 
CCCATTATGT TCAACAGTCA CACACACCAC CAGAAACTGA AGAAAGCTTG 
TTTTTTTTCT CTTGCATGAC CCTTCGCTTC TCTTCTCCTC TCTTCTCTAC 
CGAAGTTTGA TTCTTCTCTC TCGACTAGTT TGGACAATCT ACAAAACACC 
AATCGAAGCA AAAAGATCGA AAAAGTAGAG ATTGGCTTAT GGGAGAGAGG 
GAGAGATAGG ATGGTACATA TTCTTCTTAG CTTTCTACTT ACTTAGCATA 
TCTACTAATC CATTAACATA GTTTATTTCA GCTTTTAACA CCATTAATTA 
ATACCAAAAC CGTTGTTTGT GTAACACATA GTCTTTGAAA AGCTTTCTTC 
ACTTAAATTA GAAACTTCTT TTACCATTAT ATTTAAATCC AAAAAATTAC 
GTCGTCGACA TCAATGCTTG TATGTAGTTT CTCATAAATG CATCAAATGC 
CATAAGACTC ACAAATAAAT AACATATCTC T

AT2G35320.1

Model type: Protein coding
Short Description: EYES ABSENT homolog
Curator Summary: homologue of the animal Eyes Absent genes. encodes a tyrosine-specific phosphatase. the protein sequence lacks the cys-containing signature of the classical tyrosine phosphatases. belongs to the aspartate-based phosphatases. The enzyme activity is strictly metal-dependent.
Computational Description: EYES ABSENT homolog (EYA); CONTAINS InterPro DOMAIN/s: EYA (InterPro:IPR006545); Has 432 Blast hits to 431 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G35330.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G32530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G35330.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G32530.1).
Link: InterPro Scan - TAIR

AT4G02800.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 3209 Blast hits to 2720 proteins in 308 species: Archae - 13; Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants - 183; Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G02810.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF3049)
Computational Description: Protein of unknown function (DUF3049); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3049 (InterPro:IPR021410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3049) (TAIR:AT1G03170.1); Has 61763 Blast hits to 21586 proteins in 896 species: Archae - 112; Bacteria - 2155; Metazoa - 26171; Fungi - 6892; Plants - 3461; Viruses - 1647; Other Eukaryotes - 21325 (source: NCBI BLink).
Link: InterPro Scan - TAIR