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GT19736

CSHL Arabidopsis genetrap mutant lines

Original: GT19736

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19736

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19736 - 5-prime edge 
    GGGGGGGGGG GGGGGGGGGG GGGGGGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5972750 [Map]; Strand: w
      • AT1G17410.1 - [+] show detail - Nucleoside diphosphate kinase family protein
        Distance: -2775; Region: intergenic
      • AT1G17420.1 - [+] show detail - lipoxygenase 3
        Distance: -4661; Region: intergenic
    Flanking Genome Sequence: GT19736 - 5-prime edge 
    TTAAGAGATC TACTTAAGCT TAATCCACAA GAATTAAAAT CATGGCATAT 
    GAAGCAAATG ATGATTGAGA AAGAGGAAGG GATAATGAAG CAAAGAGGCC 
    GAAAGGATCT TTCAAAATGT GGCAAAACTC ATTAAGTCTC ACATTTGTCT 
    TTAGCATTTG TTTGTGTTCG AAAACACATG GTTCACAAAT TTTTGAGGTT 
    TATTAATTTG CTAGGTCTCA ATCGATTTAT AGTGTCACCA CTTACCCCTG 
    TTTCCATTTC TTTAATTTAC TGTCTTTACT TCTTCACCTA TACGTATTGA 
    AAAAATTACT CCAATTAAAG ACGAATGTTG ATTATGAAGT AGAGTAACAA 
    GTGTAATTAG ATGAAGCTAT ATACTTTCAA AACTTCAGCG TATTAACAAA 
    ACTAATTATG AGAAGTACCA AAAAGAAAAG GAAAAATGGA CGGTGGAAGA 
    GAGAGGACAT GAACGTTAGA GTGGAAGGAT TCATGAGCCG GAATT

AT1G17410.1

Model type
Protein coding
Short Description
Nucleoside diphosphate kinase family protein
Computational Description
Nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1); Has 9030 Blast hits to 8806 proteins in 2558 species: Archae - 289; Bacteria - 4566; Metazoa - 1151; Fungi - 165; Plants - 382; Viruses - 117; Other Eukaryotes - 2360 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17420.1

Model type
Protein coding
Short Description
lipoxygenase 3
Curator Summary
Lipoxygenase
Computational Description
lipoxygenase 3 (LOX3); FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, response to fungus, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1470 Blast hits to 1436 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 529; Fungi - 49; Plants - 787; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR