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GT20255

CSHL Arabidopsis genetrap mutant lines

Original: GT20255

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20255

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 920060 [Map]; Strand: w
      • AT2G03090.1 - [+] show detail - expansin A15
        Distance: -1417; Region: intergenic
      • AT2G03100.1 - [+] show detail - transposable element gene
        Distance: 6749; Region: intergenic
    Flanking Genome Sequence: GT20255 - 5-prime edge
    TTTCTCCGTG TGACATATAA AATAATCATT GAGACAATCA CCCTACCATG 
    CATGCTTTGA TAATGTGGAA TATAAAACAT ATATATAATC ATGAATAAAG
    AATTTGCTTC TTATTTAGAA GTATTAATTC AGCAGCATAT TATCAAAATA
    AATGAAGTTT CGAAAAACCA GTCTTTAATT CTAACCAGCA AGGTTGGGAC
    TTTGAATTCT AGAATAATCA CACCACATAT GCATAAAGCA TGCAAATGTA
    TAGTATTAAA ATAAGATTAA ACATATCTTT TCCAACGCTG CGT

AT2G03090.1

Model type
Protein coding
Short Description
expansin A15
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.2e-225 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR